Factsheet for GSMUA_Achr1P25630_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
endoplasmic reticulum 1
mitochondrion 2
cytosol 1
plastid 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol, golgi, plastid	75.2	84.86
GSMUA_Achr8P33210_001	Banana	cytosol	83.06	83.63
GSMUA_Achr9P30270_001	Banana	plastid	79.67	83.4
Os11t0433500-01	Rice	cytosol, plasma membrane	39.3	82.62
GSMUA_Achr11P...	Banana	cytosol	22.63	76.26
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	17.89	73.74
OQU83385	Sorghum	cytosol, plastid	79.0	73.52
Zm00001d049155_P004	Maize	plastid	78.73	73.45
VIT_05s0062g00130.t01	Wine grape	cytosol	76.42	73.15
TraesCS4B01G163100.3	Wheat	plastid	77.24	72.89
TraesCS4D01G151400.1	Wheat	golgi	77.24	72.89
TraesCS4A01G151800.3	Wheat	cytosol, plastid	77.1	72.39
GSMUA_Achr6P19740_001	Banana	cytosol, plastid	7.99	71.08
KRG97365	Soybean	cytosol, endoplasmic reticulum, nucleus	72.76	70.1
KRH31551	Soybean	endoplasmic reticulum	72.76	70.01
CDY12077	Canola	cytosol	69.78	69.88
CDY12738	Canola	cytosol	68.97	69.16
CDX90271	Canola	cytosol	69.11	69.11
Bra010748.1-P	Field mustard	cytosol	68.97	68.97
HORVU4Hr1G041690.2	Barley	cytosol, nucleus	76.96	68.52
Bra032766.1-P	Field mustard	cytosol	71.27	68.13
CDY15544	Canola	cytosol	70.6	67.93
Bra030613.1-P	Field mustard	cytosol	70.6	67.93
Solyc05g053830.2.1	Tomato	cytosol, nucleus, plastid	72.09	67.86
CDX86574	Canola	cytosol	70.46	67.8
PGSC0003DMT400040714	Potato	cytosol	71.95	67.73
PGSC0003DMT400080958	Potato	cytosol	69.24	66.88
Solyc09g092680.2.1	Tomato	cytosol	69.24	66.71
CDY01197	Canola	cytosol	68.83	66.67
AT4G14160.1	Thale cress	cytosol	69.51	66.36
AT1G05520.1	Thale cress	cytosol	70.33	66.28
AT3G23660.2	Thale cress	cytosol	70.87	66.12
Zm00001d004639_P001	Maize	plastid	32.93	58.55
Zm00001d004640_P001	Maize	cytosol, plastid	38.75	56.86
GSMUA_AchrUn_...	Banana	cytosol	39.7	53.86
GSMUA_Achr4P11140_001	Banana	cytosol	19.65	52.73
CDY12241	Canola	cytosol	43.09	52.3
CDY64015	Canola	cytosol	7.18	38.13
Bra021056.1-P	Field mustard	cytosol, nucleus, plastid	8.67	28.7
GSMUA_Achr4P11150_001	Banana	cytosol	14.23	26.79
GSMUA_Achr11P...	Banana	plastid	16.12	13.82
GSMUA_Achr6P20530_001	Banana	plastid	16.26	13.76

Protein Annotations

Gene3D:1.20.120.730	Gene3D:2.30.30.380	Gene3D:2.60.40.1670	MapMan:22.4.1.3.1	Gene3D:3.40.20.10	Gene3D:3.40.50.410
InterPro:ADF-H/Gelsolin-like_dom_sf	GO:GO:0000139	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0006886	GO:GO:0006888
GO:GO:0008150	GO:GO:0008270	GO:GO:0009987	GO:GO:0015031	GO:GO:0016020	GO:GO:0016043
GO:GO:0030127	GO:GO:0090114	EnsemblPlantsGene:GSMUA_Achr1G25630_001	EnsemblPlants:GSMUA_Achr1P25630_001	EnsemblPlants:GSMUA_Achr1T25630_001	InterPro:Gelsolin-like_dom
InterPro:Gelsolin-like_dom_sf	InterPro:IPR029006	InterPro:IPR036465	UniProt:M0S320	PFAM:PF00626	PFAM:PF04810
PFAM:PF04811	PFAM:PF04815	PFAM:PF08033	PANTHER:PTHR11141	PANTHER:PTHR11141:SF2	SUPFAM:SSF53300
SUPFAM:SSF81811	SUPFAM:SSF81995	SUPFAM:SSF82754	SUPFAM:SSF82919	InterPro:Sec23	InterPro:Sec23/24_helical_dom
InterPro:Sec23/24_helical_dom_sf	InterPro:Sec23/24_trunk_dom	InterPro:Sec23_24_beta_S	InterPro:Sec23_C	UniParc:UPI000296F15E	InterPro:Znf_Sec23_Sec24
InterPro:Znf_Sec23_Sec24_sf	SEG:seg	InterPro:vWFA_dom_sf	:	:	:

Description

Putative Protein transport protein SEC23 [Source:GMGC_GENE;Acc:GSMUA_Achr1G25630_001]

Coordinates

chr1:-:19935230..19944472

Molecular Weight (calculated)

81358.5 Da

IEP (calculated)

6.738

GRAVY (calculated)

-0.045

Length

738 amino acids

Sequence
(BLAST)

001: MTWNNWPRSK LEASKCVVPV AASIAPIRAS PSLLVLPYNP LRCKPPCSAV LNPFARVDFA AKIWICPFCF SRNHFPPHYA AISEAVVPGE LYPQCTTVEY
101: APPPLDHYSA PSSPQPPPPV FLFVIDTCLI EEELGFVKSA MRRAIGFADV SKIFVFRGTK EISKDQILDH LGLSASSVRH GAAVGAPGYP KVPQANGFHP
201: SGSVNRFLLP AADCEYALSS LLDELQTDQW PVEAGNRALR CTGVALNVAS GLLGACMPGT GARIIALVGG PCTQGPGMIV SKDFSESVRS HKDLDKDAGT
301: HFHKAVKFYD NLAKQLVNQG HVLDLFASAV DQVGLAEMKV AVERTGGLVV LAESFGHPVF KDSFKRIFED GEQSLGLSFN GTLEINCSKD IKIQGVIGPC
401: TSLEKKGALC ADTIVGQGNT TSWKMCGLDR TTCLTVFFEI SPSERPNQSG IPNPQLYIQF LTNYQGPEGQ MRLRVTTVTR RWVDGSCTEE LVEGFDQETA
501: AVVFARYVSL KMEMEQEFDA TRWLDRSLIR FCSRFGDYRK DDPASFTLNP NFSILPQFMF NLRRSQFVIN NSPDETAYFR MLLNRESISN SVVMIQPSLL
601: SYSFNSPPSP ALLDVASISA DRILLLDAYF SVVIFHGMTI AQWRNMGYQN QPEHQVFAQL LQAPQDDAQI IIKNRFPVPR LVICDHHGSQ ARFLLAKLNP
701: SATYNSAHEV APGSDVIFTN DVSLQIFCEH LQRLAVQS

Best Arabidopsis Sequence Match ( AT3G23660.1 )
(BLAST)

001: MAETANTDLE GIDGVRMTWN VWPHSKAEAS KCVIPLAACI SPIRRHADIP TLPYAPLRCR TCSAALNAYA QVDFTAKLWI CPFCYQRNHF PPHYHVISET
101: NLPGELYPQY TTVEYTLPPP VANGEGLVDP PVFVFVLDTC MIEEELDFAK SALKQAIGLL PENALVGFVS FGTQAHVHEL GFSEMSKVFV FKGDKEISKD
201: QILDQLGLGG SSRRGGSKGP QNGFPSSGLN RFLLPASECE FTLNSLLDEL QSDQWPVKPG HRSQRCTGVA LSVAAGLLGA CLPGTGARIV ALIGGPCTEG
301: PGTIVSKDLS DPVRSHKDLD KDAAPYYKKA VKFYDSIAKQ LVTQGHVLDL FASALDQVGV AEMKVAVERT GGLVVLSESF GHSVFKDSFK RVFEDGDQAL
401: GLCFNGTLEI CCSQDIKIQG AIGPCSSLEK KGASVADTVI GEGNTSAWRL CGLDKTTCLT IFFDISSSGS NTPGAANPQF YLQFLTSYQN PEGQTLLRVT
501: TVCRQWIDSA VSSEELVQGF DQETAAVVMA RLASLKMESE EGFDATRWLD RNLIRLCSKF GDYRKDDPAS FTLNPYFSLF PQFIFNLRRS QFVQVFNNSP
601: DETAYFCMLL NRENISNATV MIQPSLTTYS FNSPAEPALL DVASIAADRI LLLDAYFSVV VFHGMTIAQW RNMGYHHQPE HQAFAELLQA PQEDSQMIVR
701: ERFPVPRLVV CDQHGSQARF LLAKLNPSAT YNNANEMSTG SDVIFTDDVS LQVFFEHLQK LVVQS

Arabidopsis Description

Sec23/Sec24 protein transport family protein [Source:UniProtKB/TrEMBL;Acc:F4J462]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.