Factsheet for VIT_05s0062g00130.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
endoplasmic reticulum 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97365	Soybean	cytosol, endoplasmic reticulum, nucleus	83.14	83.68
KRH31551	Soybean	endoplasmic reticulum	82.75	83.18
Bra032766.1-P	Field mustard	cytosol	82.1	81.99
CDY12738	Canola	cytosol	76.52	80.16
CDX90271	Canola	cytosol	76.65	80.08
CDY12077	Canola	cytosol	76.26	79.78
Bra010748.1-P	Field mustard	cytosol	76.26	79.67
GSMUA_Achr10P...	Banana	cytosol, golgi, plastid	67.32	79.36
AT4G14160.1	Thale cress	cytosol	79.51	79.3
PGSC0003DMT400040714	Potato	cytosol	80.42	79.08
Bra030613.1-P	Field mustard	cytosol	78.47	78.88
CDX86574	Canola	cytosol	78.47	78.88
CDY15544	Canola	cytosol	78.47	78.88
Solyc05g053830.2.1	Tomato	cytosol, nucleus, plastid	80.16	78.83
AT1G05520.1	Thale cress	cytosol	79.77	78.54
Os11t0433500-01	Rice	cytosol, plasma membrane	35.67	78.35
GSMUA_Achr9P30270_001	Banana	plastid	71.6	78.3
AT3G23660.2	Thale cress	cytosol	80.16	78.13
PGSC0003DMT400080958	Potato	cytosol	77.17	77.88
CDY01197	Canola	cytosol	76.91	77.82
GSMUA_Achr8P33210_001	Banana	cytosol	73.93	77.76
Solyc09g092680.2.1	Tomato	cytosol	76.78	77.28
GSMUA_Achr1P25630_001	Banana	plastid	73.15	76.42
TraesCS4D01G151400.1	Wheat	golgi	73.41	72.38
TraesCS4B01G163100.3	Wheat	plastid	73.41	72.38
Zm00001d049155_P004	Maize	plastid	74.19	72.31
OQU83385	Sorghum	cytosol, plastid	74.19	72.13
TraesCS4A01G151800.3	Wheat	cytosol, plastid	73.15	71.76
GSMUA_Achr11P...	Banana	cytosol	20.1	70.78
HORVU4Hr1G041690.2	Barley	cytosol, nucleus	73.67	68.52
VIT_15s0045g00540.t01	Wine grape	cytosol	64.33	63.51
CDY12241	Canola	cytosol	48.9	62.01
Zm00001d004639_P001	Maize	plastid	32.68	60.72
Zm00001d004640_P001	Maize	cytosol, plastid	36.97	56.66
VIT_05s0020g04710.t01	Wine grape	plasma membrane	45.66	31.07
VIT_07s0005g02630.t01	Wine grape	plastid	16.6	14.65

Protein Annotations

Gene3D:1.20.120.730	EntrezGene:100262252	wikigene:100262252	Gene3D:2.30.30.380	Gene3D:2.60.40.1670	MapMan:22.4.1.3.1
Gene3D:3.40.20.10	Gene3D:3.40.50.410	InterPro:ADF-H/Gelsolin-like_dom_sf	ProteinID:CCB61759	ProteinID:CCB61759.1	UniProt:F6I4C2
EMBL:FN596745	GO:GO:0000139	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0006886	GO:GO:0006888
GO:GO:0008150	GO:GO:0008270	GO:GO:0009987	GO:GO:0015031	GO:GO:0016020	GO:GO:0016043
GO:GO:0030127	GO:GO:0090114	InterPro:Gelsolin-like_dom	InterPro:Gelsolin-like_dom_sf	InterPro:IPR029006	InterPro:IPR036465
EntrezGene:LOC100262252	wikigene:LOC100262252	PFAM:PF00626	PFAM:PF04810	PFAM:PF04811	PFAM:PF04815
PFAM:PF08033	PANTHER:PTHR11141	PANTHER:PTHR11141:SF2	SUPFAM:SSF53300	SUPFAM:SSF81811	SUPFAM:SSF81995
SUPFAM:SSF82754	SUPFAM:SSF82919	InterPro:Sec23	InterPro:Sec23/24_helical_dom	InterPro:Sec23/24_helical_dom_sf	InterPro:Sec23/24_trunk_dom
InterPro:Sec23_24_beta_S	InterPro:Sec23_C	TIGR:TC57335	UniParc:UPI00019858A4	ArrayExpress:VIT_05s0062g00130	EnsemblPlantsGene:VIT_05s0062g00130
EnsemblPlants:VIT_05s0062g00130.t01	unigene:Vvi.3889	RefSeq:XP_002268633	RefSeq:XP_002268633.2	RefSeq:XP_010650390.1	InterPro:Znf_Sec23_Sec24
InterPro:Znf_Sec23_Sec24_sf	SEG:seg	InterPro:vWFA_dom_sf	:	:	:

Description

No Description!

Coordinates

chr5:+:18260933..18285998

Molecular Weight (calculated)

84968.7 Da

IEP (calculated)

5.896

GRAVY (calculated)

-0.049

Length

771 amino acids

Sequence
(BLAST)

001: MSEMGADQEG IDGVRMTWNV WPRTKVEASK CVIPIAASVS PIRSHPDIPT LPYAPLRCKT CISLLNPFCR VDFAAKIWIC PFCFQRNHFP HHYSMISESN
101: LPGELYPQYT TVEYSLSNPG AVPDVAAPQS IPPVFLFVLD TCMIEEELGF VKSALKRAIG LLPENALVGF VSFGTQVQVH ELGFSEISKV YVFRGSKEIS
201: KDQVLEQLGL GGAGRRAVGG YPKGVQNGYA SSGVTRFLLP ASDCEYTLNS LLDELQTDQW PVQPGHRALR CTGVALSVAA GLLGACLPGT GARIIALVGG
301: PCTEGPGTIV SKDLSDPVRS HKDLDKDAAP YFKKAVQFYE NIAKQMVSQG HVLDLFASAL DQVGVAEMKV VVERTGGLVV LAESFGHSVF KDSFKRIFEE
401: GEQSLGLSFN GTLEINCSKD IKIQGIIGPC TSLEKKGPSV ADTVIGEGST TSWKMCGLDK TTCLTVFFDI SSSERSNPPG TSNPQLYLQF IVSYQNPEGQ
501: TRLRVTTVTR RWVDSAVSSE ELVQGFDQET AAVVMARLTS LKMETEEGFD ATRWLDRSLI RLCSKFGDYR KDDPASFTLN PCFSLFPQFM FNLRRSQFVQ
601: VFNNSPDETA YFRMLLNREN IPNTAVMIQP SLISYSFNSL PAPALLDVAS ISADRILLLD SYFSVVIFHG MTIAQWRNMG YQNQPEHQAF AQLLQAPQDD
701: AKLIIHDRFP VPRLVVCDQH GSQARFLLAK LNPSATYNNA HEMATGSDVI FTDDVSLQVF FEHLQRLAVQ S

Best Arabidopsis Sequence Match ( AT3G23660.1 )
(BLAST)

001: MAETANTDLE GIDGVRMTWN VWPHSKAEAS KCVIPLAACI SPIRRHADIP TLPYAPLRCR TCSAALNAYA QVDFTAKLWI CPFCYQRNHF PPHYHVISET
101: NLPGELYPQY TTVEYTLPPP VANGEGLVDP PVFVFVLDTC MIEEELDFAK SALKQAIGLL PENALVGFVS FGTQAHVHEL GFSEMSKVFV FKGDKEISKD
201: QILDQLGLGG SSRRGGSKGP QNGFPSSGLN RFLLPASECE FTLNSLLDEL QSDQWPVKPG HRSQRCTGVA LSVAAGLLGA CLPGTGARIV ALIGGPCTEG
301: PGTIVSKDLS DPVRSHKDLD KDAAPYYKKA VKFYDSIAKQ LVTQGHVLDL FASALDQVGV AEMKVAVERT GGLVVLSESF GHSVFKDSFK RVFEDGDQAL
401: GLCFNGTLEI CCSQDIKIQG AIGPCSSLEK KGASVADTVI GEGNTSAWRL CGLDKTTCLT IFFDISSSGS NTPGAANPQF YLQFLTSYQN PEGQTLLRVT
501: TVCRQWIDSA VSSEELVQGF DQETAAVVMA RLASLKMESE EGFDATRWLD RNLIRLCSKF GDYRKDDPAS FTLNPYFSLF PQFIFNLRRS QFVQVFNNSP
601: DETAYFCMLL NRENISNATV MIQPSLTTYS FNSPAEPALL DVASIAADRI LLLDAYFSVV VFHGMTIAQW RNMGYHHQPE HQAFAELLQA PQEDSQMIVR
701: ERFPVPRLVV CDQHGSQARF LLAKLNPSAT YNNANEMSTG SDVIFTDDVS LQVFFEHLQK LVVQS

Arabidopsis Description

Sec23/Sec24 protein transport family protein [Source:UniProtKB/TrEMBL;Acc:F4J462]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.