Factsheet for VIT_15s0045g00540.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
endoplasmic reticulum 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	19.97	87.15
PGSC0003DMT400004550	Potato	cytosol	25.1	85.96
KRH07342	Soybean	cytosol	79.26	80.92
KRH66226	Soybean	cytosol, endoplasmic reticulum	79.0	80.44
Solyc01g081070.2.1	Tomato	cytosol, nucleus	77.21	78.93
Os08t0474700-01	Rice	plasma membrane	76.95	78.77
EER96867	Sorghum	cytosol	75.93	77.82
OQU80636	Sorghum	cytosol	75.54	77.33
Zm00001d005902_P001	Maize	cytosol	75.42	77.3
TraesCS4B01G085800.1	Wheat	cytosol	74.78	76.54
TraesCS4A01G230100.1	Wheat	cytosol	74.52	76.28
HORVU4Hr1G014740.3	Barley	cytosol	74.01	75.95
TraesCS6B01G307800.1	Wheat	cytosol	65.04	75.93
GSMUA_AchrUn_...	Banana	cytosol	52.88	75.92
TraesCS4D01G083800.1	Wheat	cytosol	69.14	75.42
TraesCS5A01G241100.1	Wheat	nucleus	72.6	74.41
TraesCS5B01G239200.1	Wheat	cytosol	72.6	74.41
HORVU5Hr1G068810.2	Barley	cytosol	72.34	74.15
AT2G21630.1	Thale cress	cytosol	69.01	70.83
CDY13800	Canola	cytosol	65.69	68.04
Bra031206.1-P	Field mustard	cytosol	64.79	67.38
VIT_05s0062g00130.t01	Wine grape	cytosol	63.51	64.33
Os09t0460200-00	Rice	plasma membrane	46.86	63.43
EER99932	Sorghum	cytosol	29.19	62.98
TraesCS5D01G247600.1	Wheat	cytosol, plastid	71.7	61.0
CDY59754	Canola	cytosol	64.4	53.12
VIT_05s0020g04710.t01	Wine grape	plasma membrane	43.79	30.19
VIT_07s0005g02630.t01	Wine grape	plastid	16.77	14.99

Protein Annotations

Gene3D:1.20.120.730	EntrezGene:100267470	wikigene:100267470	Gene3D:2.30.30.380	Gene3D:2.60.40.1670	MapMan:22.4.1.3.1
Gene3D:3.40.20.10	Gene3D:3.40.50.410	InterPro:ADF-H/Gelsolin-like_dom_sf	EMBL:AM473059	ProteinID:CAN81541	ProteinID:CAN81541.1
ProteinID:CCB60761	ProteinID:CCB60761.1	UniProt:F6I1E4	EMBL:FN596510	GO:GO:0000139	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0006810	GO:GO:0006886	GO:GO:0006888	GO:GO:0008150	GO:GO:0008270	GO:GO:0009987
GO:GO:0015031	GO:GO:0016020	GO:GO:0016043	GO:GO:0030127	GO:GO:0090114	InterPro:Gelsolin-like_dom
InterPro:Gelsolin-like_dom_sf	InterPro:IPR029006	InterPro:IPR036465	EntrezGene:LOC100267470	wikigene:LOC100267470	PFAM:PF00626
PFAM:PF04810	PFAM:PF04811	PFAM:PF04815	PFAM:PF08033	PANTHER:PTHR11141	PANTHER:PTHR11141:SF2
SUPFAM:SSF53300	SUPFAM:SSF81811	SUPFAM:SSF81995	SUPFAM:SSF82754	SUPFAM:SSF82919	InterPro:Sec23
InterPro:Sec23/24_helical_dom	InterPro:Sec23/24_helical_dom_sf	InterPro:Sec23/24_trunk_dom	InterPro:Sec23_24_beta_S	InterPro:Sec23_C	TIGR:TC69465
UniParc:UPI0002108611	ArrayExpress:VIT_15s0045g00540	EnsemblPlantsGene:VIT_15s0045g00540	EnsemblPlants:VIT_15s0045g00540.t01	RefSeq:XP_002265101	RefSeq:XP_002265101.1
InterPro:Znf_Sec23_Sec24	InterPro:Znf_Sec23_Sec24_sf	SEG:seg	InterPro:vWFA_dom_sf	:	:

Description

No Description!

Coordinates

chr15:-:5393038..5449699

Molecular Weight (calculated)

86586.0 Da

IEP (calculated)

6.152

GRAVY (calculated)

0.025

Length

781 amino acids

Sequence
(BLAST)

001: MVEFLELEAQ DGVRMPWNVI PGTKQESAQS IIPVAAIYTP LKPFPSMPVL PYTPLRCRTC RSVLNPFAIV DFSAKLWICP FCFQRNHFPA HYSSISDLNL
101: PAELFPNYTT LEYESPSDAT PVPMVFMLVV DTCLIEEEMG FLKSALAQAM DLVPDNSLVG MITFGTYVQV HELGFGHVSK SYVFKGTKDV SKDQLLEQMN
201: FFARKPRPTT GVVAGSRDGL SAESIARFLL PVAECEFALD SVLEELQKDP WPVPADQRAV RCTSTALSVA ASLLGACVPG SGARIMAFIG GPSTEGAGAI
301: VSKILSEPIR SHKDLDKDSA PHYHKAVKFY EGLAKQLVHQ GHVLDLFACA LDQVGVAELK IAVERTGGIV VLAESFGHAV FRDSLKHVFQ STDYDLGLSS
401: NGIFEINCSK DIKVQGIIGP CASLEKKGPL CSDTVVGQGN TSAWKLCGLD KDTSLCLIFD VVKKDIPDAI GQSTSNQFYF QFLTYYQHGN GQMRLRVTTL
501: SRRWIAGPGS IQAIFPRSEI PYYKQMITHH HIDLIAGFDQ ETAAVVMARV VSFKMETEAE FDPIRWLDRS LIQLCSRFGD YQKDNPSSFS LSPRFSIFPQ
601: FIFHLRRSQF VQVFNNSPDE TAYFRMILNR ENVANSVVMI QPSLISYSFH SGPEPALLDV AAIAADRILL LDSYFTVVVF HGATIAQWRN AGYQNQPEHE
701: VFAQLLRAPR DDADAIIKER FPVPRLVICD QHGSQARFLL AKLNPSATYN SASSLPGGDI LFTDDVSFEV FLDHLQRLAV Q

Best Arabidopsis Sequence Match ( AT2G21630.1 )
(BLAST)

001: MAEFGELEAQ DGVRMPWNII PVATKKEQSI DSEVPVSAIY TPLKPLRSQS LLLPYSPLRC RTCRSVLNPY SVVDFSACNW GCPFCFNRNP FPLNYSSVAD
101: NNLPPELFPH STTVEYLCDS FSSPSPPVFL FVVDTCLISE ELDFLKSSLF QALDLLPDTS ILGLITFDSL VRVYELGFPH CTKSYFFHGN KDCTKDQLLD
201: QLSFFVKNPK PSSGVIAGAR DGLSSDDIAR FLLPASDCHF TLHSVLEELG NSPWPVAADH RPARCTGVAL RIAASLLGAC FPGSAARIMA FIGGPSTQGP
301: GAIVSRELSD PIRSHKDIDK DSAMYYHKAV EFYEMLAKQL VHQGHVLDVF ASSVDQVGIA ELKVAVEQTG GFVVLAESFG HSVFRDSLKR VCQSGENDLG
401: LSSCGIFEIN CSKDIKVQGI IGPCASLEKK GPLCSDTAIG QGHTSAWKMC GLDNNTSICL VFEIAKIDTA DVVLQSQSNQ FYFQFLTYYQ HSNGQTRLRV
501: TTLSRRWVMG TESLQELSNG FDQEAAAVVM ARLISSKMET QPEFNPQRWV DKALINLCTW FGDYQKGNPS SFSLSSQLSI FPQFVFHLRR SQFVQVFNNS
601: PDETAYFRMI LYRENVSNSV VMIQPSLISF SFHSPPEPIL LDVASIAADR ILLLDSYFTL VIFHGSTIAQ WRKAGYHNQP EHQAFGHLLQ SPRDYADTIM
701: SERFPTPRLV ICDQYGSQAR FLLAKLNPCD GDAHFSGQSN VFTDDVSLSV FLDHLRRLIV H

Arabidopsis Description

At2g21630 [Source:UniProtKB/TrEMBL;Acc:Q9SIJ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.