Factsheet for GSMUA_AchrUn_randomP15840_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
endoplasmic reticulum 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99932	Sorghum	cytosol	43.93	66.02
Os09t0460200-00	Rice	plasma membrane	69.3	65.34
TraesCS6B01G307800.1	Wheat	cytosol	73.9	60.09
OQU80636	Sorghum	cytosol	80.7	57.54
Os08t0474700-01	Rice	plasma membrane	78.86	56.23
EER96867	Sorghum	cytosol	78.68	56.17
GSMUA_Achr11P...	Banana	cytosol	22.61	56.16
Zm00001d005902_P001	Maize	cytosol	78.12	55.77
TraesCS4D01G083800.1	Wheat	cytosol	73.35	55.73
KRH66226	Soybean	cytosol, endoplasmic reticulum	76.29	54.11
KRH07342	Soybean	cytosol	75.37	53.59
HORVU5Hr1G068810.2	Barley	cytosol	75.0	53.54
TraesCS5A01G241100.1	Wheat	nucleus	74.82	53.41
TraesCS5B01G239200.1	Wheat	cytosol	74.45	53.15
VIT_15s0045g00540.t01	Wine grape	cytosol	75.92	52.88
HORVU4Hr1G014740.3	Barley	cytosol	73.71	52.69
TraesCS4B01G085800.1	Wheat	cytosol	73.9	52.69
TraesCS4A01G230100.1	Wheat	cytosol	73.9	52.69
Solyc01g081070.2.1	Tomato	cytosol, nucleus	73.9	52.62
AT2G21630.1	Thale cress	cytosol	64.89	46.39
CDY13800	Canola	cytosol	61.58	44.43
Bra031206.1-P	Field mustard	cytosol	60.29	43.68
TraesCS5D01G247600.1	Wheat	cytosol, plastid	73.35	43.46
GSMUA_Achr8P33210_001	Banana	cytosol	56.25	41.75
GSMUA_Achr1P25630_001	Banana	plastid	53.86	39.7
GSMUA_Achr10P...	Banana	cytosol, golgi, plastid	47.06	39.14
GSMUA_Achr9P30270_001	Banana	plastid	50.55	39.01
CDY59754	Canola	cytosol	59.93	34.42
GSMUA_Achr4P11150_001	Banana	cytosol	23.71	32.91
GSMUA_Achr4P11140_001	Banana	cytosol	6.99	13.82
GSMUA_Achr11P...	Banana	plastid	15.62	9.87
GSMUA_Achr6P20530_001	Banana	plastid	15.26	9.52
PGSC0003DMT400004550	Potato	cytosol	0.92	2.19
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	0.18	0.56
GSMUA_Achr6P19740_001	Banana	cytosol, plastid	0.0	0.0

Protein Annotations

Gene3D:2.30.30.380	Gene3D:2.60.40.1670	MapMan:22.4.1.3.1	Gene3D:3.40.50.410	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886
GO:GO:0006888	GO:GO:0008150	GO:GO:0008270	GO:GO:0016020	GO:GO:0030127	EnsemblPlantsGene:GSMUA_AchrUn_randomG15840_001
EnsemblPlants:GSMUA_AchrUn_randomP15840_001	EnsemblPlants:GSMUA_AchrUn_randomT15840_001	InterPro:IPR036465	UniProt:M0U9J3	PFAM:PF04810	PFAM:PF04811
PFAM:PF08033	PANTHER:PTHR11141	PANTHER:PTHR11141:SF2	SUPFAM:SSF53300	SUPFAM:SSF81995	SUPFAM:SSF82919
InterPro:Sec23	InterPro:Sec23/24_trunk_dom	InterPro:Sec23_24_beta_S	UniParc:UPI000295F9FE	InterPro:Znf_Sec23_Sec24	InterPro:Znf_Sec23_Sec24_sf
InterPro:vWFA_dom_sf	:	:	:	:	:

Description

Putative Protein transport protein SEC23 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG15840_001]

Coordinates

chrchrUn_random:-:75394967..75404542

Molecular Weight (calculated)

59724.1 Da

IEP (calculated)

5.883

GRAVY (calculated)

0.070

Length

544 amino acids

Sequence
(BLAST)

001: MSEFLDLETQ DGVRMTWNML PGTKQEALGC VIPVAAIYTP LKPIPDMPVL PYSPLRCRIC RSILNPFSIV DYVAKIWVCP FCFQRNHFPQ HYLSISEDNL
101: PAELFPQYTT IEYASSIETG SKIPSVFLFV VDTCMIEEEI VFLKSALSQA IELLPENSLV GLITFGTYVQ VHELGFGHMP KSYVFKGSKE YTKEQLLDQM
201: CFFAGKARPN VGVIAGPRDG LSSESVGRFL LPASECEFVL NSVLEELQRD PWPVPADQRA SRCTSTALSI AASLLGLCVP GTGARIMAFV GGPSTEGTGS
301: IVSKNLSEPI RSHKDLDKGA APLYNKAVKF YEALSKQLAH QGHVLDLFAC ALDQVGVAEL KVAVERTGGI VVLAESFGHS VFKDSLRRIF QSAEYDLGLA
401: FNGVFEVNCS KDLKVQGIIG PCASLDKKGP LCAETIVGQG NTSAWKMCGL DKKTSLCLIF EIVRKDGPET NAQPTSNQFY FQFLTYYQHS DGQMRLRATT
501: LSRRWVAGPG STQDLVSGFD QEAAAAVMAR LVSFKMETEV CFIV

Best Arabidopsis Sequence Match ( AT2G21630.1 )
(BLAST)

001: MAEFGELEAQ DGVRMPWNII PVATKKEQSI DSEVPVSAIY TPLKPLRSQS LLLPYSPLRC RTCRSVLNPY SVVDFSACNW GCPFCFNRNP FPLNYSSVAD
101: NNLPPELFPH STTVEYLCDS FSSPSPPVFL FVVDTCLISE ELDFLKSSLF QALDLLPDTS ILGLITFDSL VRVYELGFPH CTKSYFFHGN KDCTKDQLLD
201: QLSFFVKNPK PSSGVIAGAR DGLSSDDIAR FLLPASDCHF TLHSVLEELG NSPWPVAADH RPARCTGVAL RIAASLLGAC FPGSAARIMA FIGGPSTQGP
301: GAIVSRELSD PIRSHKDIDK DSAMYYHKAV EFYEMLAKQL VHQGHVLDVF ASSVDQVGIA ELKVAVEQTG GFVVLAESFG HSVFRDSLKR VCQSGENDLG
401: LSSCGIFEIN CSKDIKVQGI IGPCASLEKK GPLCSDTAIG QGHTSAWKMC GLDNNTSICL VFEIAKIDTA DVVLQSQSNQ FYFQFLTYYQ HSNGQTRLRV
501: TTLSRRWVMG TESLQELSNG FDQEAAAVVM ARLISSKMET QPEFNPQRWV DKALINLCTW FGDYQKGNPS SFSLSSQLSI FPQFVFHLRR SQFVQVFNNS
601: PDETAYFRMI LYRENVSNSV VMIQPSLISF SFHSPPEPIL LDVASIAADR ILLLDSYFTL VIFHGSTIAQ WRKAGYHNQP EHQAFGHLLQ SPRDYADTIM
701: SERFPTPRLV ICDQYGSQAR FLLAKLNPCD GDAHFSGQSN VFTDDVSLSV FLDHLRRLIV H

Arabidopsis Description

At2g21630 [Source:UniProtKB/TrEMBL;Acc:Q9SIJ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.