Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- endoplasmic reticulum 3
- mitochondrion 1
- cytosol 2
- plasma membrane 3
- extracellular 2
- vacuole 2
- golgi 2
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion | 55.42 | 25.7 |
| Bra005626.1-P | Field mustard | cytosol | 31.33 | 22.41 |
| GSMUA_Achr10P... | Banana | cytosol, golgi, plastid | 67.47 | 8.56 |
| GSMUA_Achr9P30270_001 | Banana | plastid | 72.29 | 8.51 |
| GSMUA_Achr8P33210_001 | Banana | cytosol | 71.08 | 8.05 |
| GSMUA_Achr1P25630_001 | Banana | plastid | 71.08 | 7.99 |
| GSMUA_Achr4P11140_001 | Banana | cytosol | 25.3 | 7.64 |
| GSMUA_Achr6P20530_001 | Banana | plastid | 10.84 | 1.03 |
| GSMUA_Achr11P... | Banana | plastid | 9.64 | 0.93 |
| GSMUA_Achr11P... | Banana | cytosol | 2.41 | 0.91 |
| GSMUA_Achr4P11150_001 | Banana | cytosol | 0.0 | 0.0 |
| GSMUA_AchrUn_... | Banana | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P19740_001 | EnsemblPlants:GSMUA_Achr6T19740_001 | EnsemblPlantsGene:GSMUA_Achr6G19740_001 | Gene3D:3.40.20.10 | InterPro:ADF-H/Gelsolin-like_dom_sf | InterPro:Gelsolin-like_dom_sf |
| InterPro:IPR029006 | InterPro:Sec23 | PANTHER:PTHR11141 | PANTHER:PTHR11141:SF2 | SEG:seg | SUPFAM:SSF82754 |
| UniParc:UPI0002955AF7 | UniProt:M0T8H2 | MapMan:35.2 | : | : | : |
Description
Putative Protein transport protein Sec23A [Source:GMGC_GENE;Acc:GSMUA_Achr6G19740_001]
Coordinates
chr6:-:14019375..14020759
Molecular Weight (calculated)
8759.5 Da
IEP (calculated)
5.473
GRAVY (calculated)
0.482
Length
83 amino acids
Sequence
(BLAST)
(BLAST)
1: MLLSRESITN SVVMIQSSLF SYSSNSPPAP ASLDVASISA DRILLLDAFF SVAVFHGMTI AQWLPESTRA SGLLHSAITS TSG
001: MAETANTDLE GIDGVRMTWN VWPHSKAEAS KCVIPLAACI SPIRRHADIP TLPYAPLRCR TCSAALNAYA QVDFTAKLWI CPFCYQRNHF PPHYHVISET
101: NLPGELYPQY TTVEYTLPPP VANGEGLVDP PVFVFVLDTC MIEEELDFAK SALKQAIGLL PENALVGFVS FGTQAHVHEL GFSEMSKVFV FKGDKEISKD
201: QILDQLGLGG SSRRGGSKGP QNGFPSSGLN RFLLPASECE FTLNSLLDEL QSDQWPVKPG HRSQRCTGVA LSVAAGLLGA CLPGTGARIV ALIGGPCTEG
301: PGTIVSKDLS DPVRSHKDLD KDAAPYYKKA VKFYDSIAKQ LVTQGHVLDL FASALDQVGV AEMKVAVERT GGLVVLSESF GHSVFKDSFK RVFEDGDQAL
401: GLCFNGTLEI CCSQDIKIQG AIGPCSSLEK KGASVADTVI GEGNTSAWRL CGLDKTTCLT IFFDISSSGS NTPGAANPQF YLQFLTSYQN PEGQTLLRVT
501: TVCRQWIDSA VSSEELVQGF DQETAAVVMA RLASLKMESE EGFDATRWLD RNLIRLCSKF GDYRKDDPAS FTLNPYFSLF PQFIFNLRRS QFVQVFNNSP
601: DETAYFCMLL NRENISNATV MIQPSLTTYS FNSPAEPALL DVASIAADRI LLLDAYFSVV VFHGMTIAQW RNMGYHHQPE HQAFAELLQA PQEDSQMIVR
701: ERFPVPRLVV CDQHGSQARF LLAKLNPSAT YNNANEMSTG SDVIFTDDVS LQVFFEHLQK LVVQS
101: NLPGELYPQY TTVEYTLPPP VANGEGLVDP PVFVFVLDTC MIEEELDFAK SALKQAIGLL PENALVGFVS FGTQAHVHEL GFSEMSKVFV FKGDKEISKD
201: QILDQLGLGG SSRRGGSKGP QNGFPSSGLN RFLLPASECE FTLNSLLDEL QSDQWPVKPG HRSQRCTGVA LSVAAGLLGA CLPGTGARIV ALIGGPCTEG
301: PGTIVSKDLS DPVRSHKDLD KDAAPYYKKA VKFYDSIAKQ LVTQGHVLDL FASALDQVGV AEMKVAVERT GGLVVLSESF GHSVFKDSFK RVFEDGDQAL
401: GLCFNGTLEI CCSQDIKIQG AIGPCSSLEK KGASVADTVI GEGNTSAWRL CGLDKTTCLT IFFDISSSGS NTPGAANPQF YLQFLTSYQN PEGQTLLRVT
501: TVCRQWIDSA VSSEELVQGF DQETAAVVMA RLASLKMESE EGFDATRWLD RNLIRLCSKF GDYRKDDPAS FTLNPYFSLF PQFIFNLRRS QFVQVFNNSP
601: DETAYFCMLL NRENISNATV MIQPSLTTYS FNSPAEPALL DVASIAADRI LLLDAYFSVV VFHGMTIAQW RNMGYHHQPE HQAFAELLQA PQEDSQMIVR
701: ERFPVPRLVV CDQHGSQARF LLAKLNPSAT YNNANEMSTG SDVIFTDDVS LQVFFEHLQK LVVQS
Arabidopsis Description
Sec23/Sec24 protein transport family protein [Source:UniProtKB/TrEMBL;Acc:F4J462]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.