Factsheet for GSMUA_Achr9P30270_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
endoplasmic reticulum 1
mitochondrion 2
cytosol 2
plasma membrane 1
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0433500-01	Rice	cytosol, plasma membrane	41.84	84.05
GSMUA_Achr10P...	Banana	cytosol, golgi, plastid	77.87	83.94
GSMUA_Achr11P...	Banana	cytosol	25.82	83.11
GSMUA_Achr1P25630_001	Banana	plastid	83.4	79.67
GSMUA_Achr8P33210_001	Banana	cytosol	79.43	76.4
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	18.87	74.3
GSMUA_Achr6P19740_001	Banana	cytosol, plastid	8.51	72.29
VIT_05s0062g00130.t01	Wine grape	cytosol	78.3	71.6
Zm00001d049155_P004	Maize	plastid	77.87	69.41
OQU83385	Sorghum	cytosol, plastid	77.87	69.23
TraesCS4B01G163100.3	Wheat	plastid	76.6	69.05
TraesCS4D01G151400.1	Wheat	golgi	76.6	69.05
TraesCS4A01G151800.3	Wheat	cytosol, plastid	76.6	68.7
CDY12077	Canola	cytosol	71.35	68.25
KRH31551	Soybean	endoplasmic reticulum	73.9	67.93
KRG97365	Soybean	cytosol, endoplasmic reticulum, nucleus	73.76	67.89
CDY12738	Canola	cytosol	70.21	67.26
Bra010748.1-P	Field mustard	cytosol	70.35	67.21
CDX90271	Canola	cytosol	70.35	67.21
Bra032766.1-P	Field mustard	cytosol	72.62	66.32
Bra030613.1-P	Field mustard	cytosol	71.49	65.71
CDX86574	Canola	cytosol	71.49	65.71
CDY15544	Canola	cytosol	71.49	65.71
Solyc05g053830.2.1	Tomato	cytosol, nucleus, plastid	73.05	65.69
PGSC0003DMT400040714	Potato	cytosol	72.91	65.56
CDY01197	Canola	cytosol	70.5	65.22
PGSC0003DMT400080958	Potato	cytosol	70.35	64.92
HORVU4Hr1G041690.2	Barley	cytosol, nucleus	76.31	64.9
AT4G14160.1	Thale cress	cytosol	71.06	64.81
AT1G05520.1	Thale cress	cytosol	71.91	64.75
Solyc09g092680.2.1	Tomato	cytosol	70.07	64.49
AT3G23660.2	Thale cress	cytosol	71.21	63.46
Zm00001d004640_P001	Maize	cytosol, plastid	39.86	55.86
GSMUA_Achr4P11140_001	Banana	cytosol	20.57	52.73
CDY12241	Canola	cytosol	45.39	52.63
Zm00001d004639_P001	Maize	plastid	29.79	50.6
GSMUA_AchrUn_...	Banana	cytosol	39.01	50.55
CDY64015	Canola	cytosol	8.51	43.17
Bra021056.1-P	Field mustard	cytosol, nucleus, plastid	9.22	29.15
GSMUA_Achr4P11150_001	Banana	cytosol	13.62	24.49
GSMUA_Achr11P...	Banana	plastid	16.31	13.36
GSMUA_Achr6P20530_001	Banana	plastid	16.45	13.3

Protein Annotations

Gene3D:1.20.120.730	Gene3D:2.60.40.1670	MapMan:22.4.1.3.1	Gene3D:3.40.20.10	Gene3D:3.40.50.410	InterPro:ADF-H/Gelsolin-like_dom_sf
GO:GO:0000139	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0006810	GO:GO:0006886	GO:GO:0006888	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031
GO:GO:0016020	GO:GO:0016043	GO:GO:0030127	GO:GO:0090114	EnsemblPlantsGene:GSMUA_Achr9G30270_001	EnsemblPlants:GSMUA_Achr9P30270_001
EnsemblPlants:GSMUA_Achr9T30270_001	InterPro:Gelsolin-like_dom	InterPro:Gelsolin-like_dom_sf	InterPro:IPR029006	InterPro:IPR036465	UniProt:M0U4T4
PFAM:PF00626	PFAM:PF04811	PFAM:PF04815	PFAM:PF08033	PANTHER:PTHR11141	PANTHER:PTHR11141:SF2
SUPFAM:SSF53300	SUPFAM:SSF81811	SUPFAM:SSF81995	SUPFAM:SSF82754	InterPro:Sec23	InterPro:Sec23/24_helical_dom
InterPro:Sec23/24_helical_dom_sf	InterPro:Sec23/24_trunk_dom	InterPro:Sec23_24_beta_S	InterPro:Sec23_C	UniParc:UPI0002962375	SEG:seg
InterPro:vWFA_dom_sf	:	:	:	:	:

Description

Putative Protein transport protein SEC23 [Source:GMGC_GENE;Acc:GSMUA_Achr9G30270_001]

Coordinates

chr9:-:33591893..33600043

Molecular Weight (calculated)

77296.6 Da

IEP (calculated)

5.855

GRAVY (calculated)

-0.041

Length

705 amino acids

Sequence
(BLAST)

001: MTWNSWPRSK VEASKCIVPV AASVTPIRAS PSLVVLPYAP LRCKPPCAAV LNPFARTNVP GELYPECTTV EYAPPPLDAA APPPLPVFLF VLDTCLIEEE
101: LGYVHLHELG FADMSKIYVF RGTKEISRDQ ILEQLGLSLA GVRHGAVGGA PAYLKGPQGN GLHPSTSVNR FLLPASDCEY TLNSLLDELQ RNQWPVEPGN
201: RDLRCTGVAL SVAAGLLGAC TGGTGARIIA LVGGPCTVGP GLIVSNDQSE PVRSHKDLDK DAAPYFHKAV KFYDNLAKQL VSQGHVLDLF ASALDQVGVA
301: EMKVAVERTG GLVVLAESFG HPVFKDSFKR IFEDGEQSLG LSFNGTLEIN CSKDIKIQGI IGPCTSMEKK GALCADTIVG QGNTTSWKMC GLDRSTCLTV
401: FFDISPSERS SQPGIPNPQL YIQFLTNYQN PEGQMRLRVT TITRAWVDGS NTEELVGGFD QETTAVVLAR YISLKMEMEE AFDASRWLDR SLIRLCSQFG
501: NYRKDDPASF TLHPNFSILP QFMFNLRRSQ FVQVSNNSPD ETAYFRMLLN RESITNSVVM IQPSLLSYSF NSPPAPALLD VTSISADRIL LLDAYFSVVI
601: FHGMTIAQWR NMGYHNQPEH QAFAQLLQAP HDDAQLIITD RFPVPRLVIC DQHGSQARFL LAKLNPSATY NSASHEVVPG SDVILTDDVS LQVFCEHLQR
701: LAVQS

Best Arabidopsis Sequence Match ( AT3G23660.1 )
(BLAST)

001: MAETANTDLE GIDGVRMTWN VWPHSKAEAS KCVIPLAACI SPIRRHADIP TLPYAPLRCR TCSAALNAYA QVDFTAKLWI CPFCYQRNHF PPHYHVISET
101: NLPGELYPQY TTVEYTLPPP VANGEGLVDP PVFVFVLDTC MIEEELDFAK SALKQAIGLL PENALVGFVS FGTQAHVHEL GFSEMSKVFV FKGDKEISKD
201: QILDQLGLGG SSRRGGSKGP QNGFPSSGLN RFLLPASECE FTLNSLLDEL QSDQWPVKPG HRSQRCTGVA LSVAAGLLGA CLPGTGARIV ALIGGPCTEG
301: PGTIVSKDLS DPVRSHKDLD KDAAPYYKKA VKFYDSIAKQ LVTQGHVLDL FASALDQVGV AEMKVAVERT GGLVVLSESF GHSVFKDSFK RVFEDGDQAL
401: GLCFNGTLEI CCSQDIKIQG AIGPCSSLEK KGASVADTVI GEGNTSAWRL CGLDKTTCLT IFFDISSSGS NTPGAANPQF YLQFLTSYQN PEGQTLLRVT
501: TVCRQWIDSA VSSEELVQGF DQETAAVVMA RLASLKMESE EGFDATRWLD RNLIRLCSKF GDYRKDDPAS FTLNPYFSLF PQFIFNLRRS QFVQVFNNSP
601: DETAYFCMLL NRENISNATV MIQPSLTTYS FNSPAEPALL DVASIAADRI LLLDAYFSVV VFHGMTIAQW RNMGYHHQPE HQAFAELLQA PQEDSQMIVR
701: ERFPVPRLVV CDQHGSQARF LLAKLNPSAT YNNANEMSTG SDVIFTDDVS LQVFFEHLQK LVVQS

Arabidopsis Description

Sec23/Sec24 protein transport family protein [Source:UniProtKB/TrEMBL;Acc:F4J462]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.