CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 1
endoplasmic reticulum 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31551	Soybean	endoplasmic reticulum	96.61	96.48
VIT_05s0062g00130.t01	Wine grape	cytosol	83.68	83.14
Bra030613.1-P	Field mustard	cytosol	79.9	79.79
CDX86574	Canola	cytosol	79.9	79.79
CDY15544	Canola	cytosol	79.9	79.79
Bra032766.1-P	Field mustard	cytosol	80.29	79.66
CDY12738	Canola	cytosol	76.11	79.21
CDX90271	Canola	cytosol	76.24	79.13
CDY12077	Canola	cytosol	75.85	78.83
Bra010748.1-P	Field mustard	cytosol	75.85	78.73
AT1G05520.1	Thale cress	cytosol	79.63	77.91
PGSC0003DMT400080958	Potato	cytosol	77.68	77.88
GSMUA_Achr10P...	Banana	cytosol, golgi, plastid	66.45	77.83
Os11t0433500-01	Rice	cytosol, plasma membrane	35.64	77.78
PGSC0003DMT400040714	Potato	cytosol	79.5	77.68
Solyc09g092680.2.1	Tomato	cytosol	77.68	77.68
AT4G14160.1	Thale cress	cytosol	78.33	77.62
Solyc05g053830.2.1	Tomato	cytosol, nucleus, plastid	79.37	77.55
AT3G23660.2	Thale cress	cytosol	79.37	76.86
CDY01197	Canola	cytosol	76.11	76.51
GSMUA_Achr8P33210_001	Banana	cytosol	70.63	73.81
GSMUA_Achr9P30270_001	Banana	plastid	67.89	73.76
GSMUA_Achr1P25630_001	Banana	plastid	70.1	72.76
OQU83385	Sorghum	cytosol, plastid	73.11	70.62
Zm00001d049155_P004	Maize	plastid	72.85	70.54
TraesCS4B01G163100.3	Wheat	plastid	71.67	70.2
TraesCS4D01G151400.1	Wheat	golgi	71.67	70.2
TraesCS4A01G151800.3	Wheat	cytosol, plastid	71.67	69.85
GSMUA_Achr11P...	Banana	cytosol	19.45	68.04
HORVU4Hr1G041690.2	Barley	cytosol, nucleus	71.54	66.1
KRH66226	Soybean	cytosol, endoplasmic reticulum	63.45	63.36
KRH07342	Soybean	cytosol	62.79	62.88
CDY12241	Canola	cytosol	49.87	62.83
Zm00001d004639_P001	Maize	plastid	31.46	58.07
Zm00001d004640_P001	Maize	cytosol, plastid	37.08	56.46
KRG97332	Soybean	cytosol	42.17	44.25
KRG96600	Soybean	nucleus	15.93	14.01
KRH68337	Soybean	nucleus	15.8	13.89

Protein Annotations

Gene3D:1.20.120.730	EntrezGene:100813940	Gene3D:2.30.30.380	Gene3D:2.60.40.1670	MapMan:22.4.1.3.1	Gene3D:3.40.20.10
Gene3D:3.40.50.410	EMBL:ACUP02010794	InterPro:ADF-H/Gelsolin-like_dom_sf	EnsemblPlantsGene:GLYMA_18G003500	GO:GO:0000139	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0006810	GO:GO:0006886	GO:GO:0006888	GO:GO:0008150	GO:GO:0008270	GO:GO:0009987
GO:GO:0015031	GO:GO:0016020	GO:GO:0016043	GO:GO:0030127	GO:GO:0090114	InterPro:Gelsolin-like_dom
InterPro:Gelsolin-like_dom_sf	UniProt:I1MYB9	InterPro:IPR029006	InterPro:IPR036465	EnsemblPlants:KRG97365	ProteinID:KRG97365
ProteinID:KRG97365.1	PFAM:PF00626	PFAM:PF04810	PFAM:PF04811	PFAM:PF04815	PFAM:PF08033
PANTHER:PTHR11141	PANTHER:PTHR11141:SF2	SUPFAM:SSF53300	SUPFAM:SSF81811	SUPFAM:SSF81995	SUPFAM:SSF82754
SUPFAM:SSF82919	InterPro:Sec23	InterPro:Sec23/24_helical_dom	InterPro:Sec23/24_helical_dom_sf	InterPro:Sec23/24_trunk_dom	InterPro:Sec23_24_beta_S
InterPro:Sec23_C	UniParc:UPI000233E86F	InterPro:Znf_Sec23_Sec24	InterPro:Znf_Sec23_Sec24_sf	SEG:seg	InterPro:vWFA_dom_sf

Description

hypothetical protein

Coordinates

chr18:-:291849..298370

Molecular Weight (calculated)

84361.0 Da

IEP (calculated)

6.134

GRAVY (calculated)

-0.047

Length

766 amino acids

Sequence
(BLAST)

001: MSEMASPDPE GLDGVRMTWN VWPRTKVESS KCVIPLAATV ALIRPHPDIP RLPYAPLRCK TCSSALNPFS RVDFTAKIWI CPFCYQRNHF PPHYHAISET
101: NLPGELYPQY TTVEYILPLS NSLNPSPVFL FLLDTCLIDE EIHFLKSALR RAIGLLPDNA LVGFVSFGTQ VQVHELGFSD MSKVYVFRGS KEIPAEQILD
201: QLGLSAAGRR PQKGAPGIAG AGGFPNSGIT RFLLPASECE YTLNALLDEL QTDQWPVPPG RRPARCTGVA LSVAAGLLSA CNPGTGARIV ALVGGPCTEG
301: PGAIVSKDLS DPVRSHKDLD KDAAPFFKKA VKFYEGLAKQ LVGQGHVLDI FASALDQVGV AEMKVAVERT GGLVVLSESF GHSVFKDSFK RVFEDGEQSL
401: GLCFNGTLEI NCSKEIKIQG IIGPCTSLEK KGPSVADTVI GEGNTTAWKM CGLDKSTCLT VMFDLSSSDR SNTPGAVNPQ LYLQFLTSYQ DPSGQSVLRV
501: TTVTRRWVDS SVSSEELVQG FDQETAAVVM ARFASLKMES EETFDATRWL DRFLIRLCSK FGDYRKDDPS SFTLNPSFSL FPQFMFNLRR SQFVQVFNNS
601: PDETAYFRML LDRENISNAA VMIQPSLISY SFNALPAPAL LDVASIAADK ILLLDSYFSV VIFHGMTIAQ WRNLGYQNQQ EHQAFAQLLR APHDDAQMII
701: RERFPVPRLV VCDQHGSQAR FLLAKLNPSA TYNNAHEMAA GSDVIFTDDV SLQVFFEHLQ RLAVQS

Best Arabidopsis Sequence Match ( AT3G23660.1 )
(BLAST)

001: MAETANTDLE GIDGVRMTWN VWPHSKAEAS KCVIPLAACI SPIRRHADIP TLPYAPLRCR TCSAALNAYA QVDFTAKLWI CPFCYQRNHF PPHYHVISET
101: NLPGELYPQY TTVEYTLPPP VANGEGLVDP PVFVFVLDTC MIEEELDFAK SALKQAIGLL PENALVGFVS FGTQAHVHEL GFSEMSKVFV FKGDKEISKD
201: QILDQLGLGG SSRRGGSKGP QNGFPSSGLN RFLLPASECE FTLNSLLDEL QSDQWPVKPG HRSQRCTGVA LSVAAGLLGA CLPGTGARIV ALIGGPCTEG
301: PGTIVSKDLS DPVRSHKDLD KDAAPYYKKA VKFYDSIAKQ LVTQGHVLDL FASALDQVGV AEMKVAVERT GGLVVLSESF GHSVFKDSFK RVFEDGDQAL
401: GLCFNGTLEI CCSQDIKIQG AIGPCSSLEK KGASVADTVI GEGNTSAWRL CGLDKTTCLT IFFDISSSGS NTPGAANPQF YLQFLTSYQN PEGQTLLRVT
501: TVCRQWIDSA VSSEELVQGF DQETAAVVMA RLASLKMESE EGFDATRWLD RNLIRLCSKF GDYRKDDPAS FTLNPYFSLF PQFIFNLRRS QFVQVFNNSP
601: DETAYFCMLL NRENISNATV MIQPSLTTYS FNSPAEPALL DVASIAADRI LLLDAYFSVV VFHGMTIAQW RNMGYHHQPE HQAFAELLQA PQEDSQMIVR
701: ERFPVPRLVV CDQHGSQARF LLAKLNPSAT YNNANEMSTG SDVIFTDDVS LQVFFEHLQK LVVQS

Arabidopsis Description

Sec23/Sec24 protein transport family protein [Source:UniProtKB/TrEMBL;Acc:F4J462]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.