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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT4G14160.1 Thale cress cytosol 80.28 82.15
VIT_05s0062g00130.t01 Wine grape cytosol 78.13 80.16
KRG97365 Soybean cytosol, endoplasmic reticulum, nucleus 76.86 79.37
KRH31551 Soybean endoplasmic reticulum 76.23 78.62
AT1G05520.1 Thale cress cytosol 77.75 78.54
GSMUA_Achr10P... Banana cytosol, golgi, plastid 61.57 74.46
PGSC0003DMT400040714 Potato cytosol 73.7 74.36
Solyc05g053830.2.1 Tomato cytosol, nucleus, plastid 73.58 74.23
PGSC0003DMT400080958 Potato cytosol 70.92 73.43
Os11t0433500-01 Rice cytosol, plasma membrane 32.49 73.22
Solyc09g092680.2.1 Tomato cytosol 70.8 73.11
GSMUA_Achr9P30270_001 Banana plastid 63.46 71.21
GSMUA_Achr1P25630_001 Banana plastid 66.12 70.87
GSMUA_Achr8P33210_001 Banana cytosol 65.49 70.67
TraesCS4B01G163100.3 Wheat plastid 68.02 68.8
TraesCS4D01G151400.1 Wheat golgi 68.02 68.8
OQU83385 Sorghum cytosol, plastid 68.77 68.6
Zm00001d049155_P004 Maize plastid 68.52 68.52
TraesCS4A01G151800.3 Wheat cytosol, plastid 68.02 68.45
GSMUA_Achr11P... Banana cytosol 17.95 64.84
HORVU4Hr1G041690.2 Barley cytosol, nucleus 67.89 64.78
Zm00001d004639_P001 Maize plastid 30.97 59.04
AT2G21630.1 Thale cress cytosol 54.87 57.03
Zm00001d004640_P001 Maize cytosol, plastid 33.88 53.28
AT5G43670.1 Thale cress cytosol 43.87 43.7
AT4G01810.2 Thale cress plastid 15.17 13.64
Protein Annotations
Gene3D:1.20.120.730Gene3D:2.30.30.380Gene3D:2.60.40.1670MapMan:22.4.1.3.1Gene3D:3.40.20.10Gene3D:3.40.50.410
EntrezGene:821946InterPro:ADF-H/Gelsolin-like_dom_sfProteinID:AEE76797.1ArrayExpress:AT3G23660EnsemblPlantsGene:AT3G23660RefSeq:AT3G23660
TAIR:AT3G23660RefSeq:AT3G23660-TAIR-GEnsemblPlants:AT3G23660.2TAIR:AT3G23660.2Unigene:At.37672UniProt:F4J462
GO:GO:0000139GO:GO:0003674GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005794GO:GO:0006810GO:GO:0006886GO:GO:0006888GO:GO:0008150
GO:GO:0008270GO:GO:0009987GO:GO:0015031GO:GO:0016020GO:GO:0016043GO:GO:0030127
GO:GO:0090114InterPro:Gelsolin-like_domInterPro:Gelsolin-like_dom_sfInterPro:IPR029006InterPro:IPR036465RefSeq:NP_001189956.1
PFAM:PF00626PFAM:PF04810PFAM:PF04811PFAM:PF04815PFAM:PF08033PO:PO:0000013
PO:PO:0000037PO:PO:0000230PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081
PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103
PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005
PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030
PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030
PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025281PANTHER:PTHR11141
PANTHER:PTHR11141:SF2SUPFAM:SSF53300SUPFAM:SSF81811SUPFAM:SSF81995SUPFAM:SSF82754SUPFAM:SSF82919
InterPro:Sec23InterPro:Sec23/24_helical_domInterPro:Sec23/24_helical_dom_sfInterPro:Sec23/24_trunk_domInterPro:Sec23_24_beta_SInterPro:Sec23_C
UniParc:UPI0001E92ED9InterPro:Znf_Sec23_Sec24InterPro:Znf_Sec23_Sec24_sfSEG:segInterPro:vWFA_dom_sf:
Description
Sec23/Sec24 protein transport family protein [Source:UniProtKB/TrEMBL;Acc:F4J462]
Coordinates
chr3:-:8513457..8517790
Molecular Weight (calculated)
87223.0 Da
IEP (calculated)
5.943
GRAVY (calculated)
-0.083
Length
791 amino acids
Sequence
(BLAST)
001: MAETANTDLE GIDGVRMTWN VWPHSKAEAS KCVIPLAACI SPIRRHADIP TLPYAPLRCR TCSAALNAYA QVDFTAKLWI CPFCYQRNHF PPHYHVISET
101: NLPGELYPQY TTVEYTLPPP VANGEGLVDP PVFVFVLDTC MIEEELDFAK SALKQAIGLL PENALVGFVS FGTQAHVHEL GFSEMSKVFV FKGDKEISKD
201: QILDQLGLGG SSRRGGSKGP QNGFPSSGLN RFLLPASECE FTLNSLLDEL QSDQWPVKPG HRSQRCTGVA LSVAAGLLGA CLPGTGARIV ALIGGPCTEG
301: PGTIVSKDLS DPVRSHKDLD KDAAPYYKKA VKFYDSIAKQ LVTQGHVLDL FASALDQVGV AEMKVAVERT GGLVVLSESF GHSVFKDSFK RVFEDGDQAL
401: GLCFNGTLEI CCSQDIKIQG AIGPCSSLEK KGASVADTVI GEGNTSAWRL CGLDKTTCLT IFFDISSSGS NTPGAANPQF YLQFLTSYQN PEGQTLLRVT
501: TVCRQWIDSA VSSEELVQGF DQETAAVVMA RLASLKMESE VRHSRKLQFG VPRISNAYLF IQKRFKEGFD ATRWLDRNLI RLCSKFGDYR KDDPASFTLN
601: PYFSLFPQFI FNLRRSQFVQ VFNNSPDETA YFCMLLNREN ISNATVMIQP SLTTYSFNSP AEPALLDVAS IAADRILLLD AYFSVVVFHG MTIAQWRNMG
701: YHHQPEHQAF AELLQAPQED SQMIVRERFP VPRLVVCDQH GSQARFLLAK LNPSATYNNA NEMSTGSDVI FTDDVSLQVF FEHLQKLVVQ S
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.