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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 3
  • plastid 5
  • cytosol 2
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, nucleus, peroxisome, plastid
BaCelLo:nucleus
ChloroP:plastid
MultiLoc:cytosol
Plant-mPloc:cytosol, nucleus, plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:nucleus
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY22008 Canola plastid 90.68 91.3
CDY07119 Canola plastid 90.23 90.85
Bra036313.1-P Field mustard cytosol, plastid 90.68 89.86
KRG96600 Soybean nucleus 74.77 75.55
KRH68337 Soybean nucleus 74.55 75.32
VIT_07s0005g02630.t01 Wine grape plastid 74.32 74.83
Solyc01g080850.2.1 Tomato plastid 73.64 74.06
Solyc09g055810.1.1 Tomato cytosol 6.59 73.42
GSMUA_Achr11P... Banana plastid 68.41 69.92
HORVU3Hr1G044780.1 Barley cytosol 57.84 69.25
GSMUA_Achr6P20530_001 Banana plastid 67.84 68.46
Zm00001d009150_P002 Maize plastid 64.77 65.82
EES02883 Sorghum cytosol, plastid 64.89 65.78
TraesCS3A01G195200.1 Wheat plastid 62.73 65.25
TraesCS3D01G198500.1 Wheat plastid 62.61 65.13
TraesCS3B01G222900.1 Wheat plastid 62.16 64.66
Os01t0321700-01 Rice cytosol, plastid 59.32 64.52
Solyc02g021380.1.1 Tomato plastid 5.11 55.56
Solyc11g056380.1.1 Tomato cytosol 9.2 52.94
AT2G21630.1 Thale cress cytosol 15.0 17.35
AT1G05520.1 Thale cress cytosol 13.86 15.58
AT4G14160.1 Thale cress cytosol 13.52 15.39
AT5G43670.1 Thale cress cytosol 13.86 15.37
AT3G23660.2 Thale cress cytosol 13.64 15.17
Protein Annotations
Gene3D:1.20.120.730Gene3D:2.30.30.380Gene3D:3.40.20.10Gene3D:3.40.50.410MapMan:35.2EntrezGene:828105
InterPro:ADF-H/Gelsolin-like_dom_sfProteinID:AEE82080.1ProteinID:ANM67456.1ProteinID:ANM67457.1ArrayExpress:AT4G01810EnsemblPlantsGene:AT4G01810
RefSeq:AT4G01810TAIR:AT4G01810RefSeq:AT4G01810-TAIR-GEnsemblPlants:AT4G01810.2Unigene:At.22791EMBL:BT002732
GO:GO:0000003GO:GO:0003674GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005783GO:GO:0005829GO:GO:0006810GO:GO:0006886GO:GO:0006888
GO:GO:0007275GO:GO:0008150GO:GO:0008270GO:GO:0009653GO:GO:0009791GO:GO:0009908
GO:GO:0009987GO:GO:0010584GO:GO:0015031GO:GO:0016020GO:GO:0016043GO:GO:0030127
GO:GO:0048658GO:GO:0070971InterPro:Gelsolin-like_domInterPro:Gelsolin-like_dom_sfInterPro:IPR029006InterPro:IPR036465
RefSeq:NP_001329285.1RefSeq:NP_001329286.1RefSeq:NP_567217.1PFAM:PF00626PFAM:PF04810PFAM:PF04811
PFAM:PF04815PFAM:PF08033PANTHER:PTHR11141PANTHER:PTHR11141:SF6UniProt:Q84WV4SUPFAM:SSF53300
SUPFAM:SSF81811SUPFAM:SSF81995SUPFAM:SSF82754SUPFAM:SSF82919InterPro:Sec23InterPro:Sec23/24_helical_dom
InterPro:Sec23/24_helical_dom_sfInterPro:Sec23/24_trunk_domInterPro:Sec23_24_beta_SUniParc:UPI000000BD8FInterPro:Znf_Sec23_Sec24InterPro:Znf_Sec23_Sec24_sf
SEG:segInterPro:vWFA_dom_sf::::
Description
Sec23/Sec24 protein transport family protein [Source:UniProtKB/TrEMBL;Acc:Q84WV4]
Coordinates
chr4:-:776460..780201
Molecular Weight (calculated)
96009.7 Da
IEP (calculated)
6.816
GRAVY (calculated)
-0.185
Length
880 amino acids
Sequence
(BLAST)
001: MANLPKSSVN YPGTLTPLEP NRPSPQPDRT PVPHSPPVVA SPIPPRFPQP SFRPDQMSSP SMKSPSLLSP ANGIRTGSPI PRLSTPPGPP VFNTPVKPAA
101: VPFRTSPATP QPMAYSSANS SLPVSTPSFY SNGSSVGSQR DLPDVVRMEE PIAADSPYVL FSANKVLKQK KLANVASLGF GAIVSAGREI SPGPQIIQRD
201: PHRCLNCGAY SNPYSSILIG SGQWQCVICE NMNGSKGEYV ASSKNELQNF PELSLPLVDY VQTGNKRPGF VPASDSRTSA PVVLVIDECL DEPHLQHLQS
301: SLHAFVDSLP QTTRLGIILY GRTVSIYDFS EDSVASADVI SGAKSPSAES MKALIYGTGV YLSPMHASLK VAHEIFSSLR PYTLNVPEAS RDRCLGTAVE
401: AALAIIQGPS AEMSRGVVRR AGGNSRIIVC AGGPITYGPG SVPHSMSHPN YPYMEKTAIK WMENLGREAH RHNTVVDILC AGTCPLRVPI LQPLAKASGG
501: VLVLHDDFGE AFGVDLQRAA TRAAGSHGLL EVRCSDDILI TQVIGPGEEA HSETHETFKS DAALSIQMLS VEETQSFSLS MENKRDIKSD HVFFQFAFHY
601: SDVYQADVSR VITFKLPTVD SISAYLQSVE DEASAVLISK RTLLLAKNQK DAVDMRATVD ERIKDIALKF GSQVPKSKLY SFPKELSSLP ELLFHLRRGP
701: LLGNIIGHED ERSVLRNLFL NASFDLSLRM VAPRCLMHQE GGTFEELPAY DLSMQSDKAV ILDHGTDVFI WLGAELSADE VKSAAVLAAC RTLAEELTEF
801: RFPAPRILAF KEGSSQARYF VCRLIPAHKD PPYEQEARFP QIRTLTTEQR MKLKSSFIEF DEASFCEWMR SLKVVPPEPR
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.