Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g055810.1.1 | Tomato | cytosol | 47.71 | 92.41 |
| Solyc02g021380.1.1 | Tomato | plastid | 35.95 | 67.9 |
| HORVU3Hr1G044780.1 | Barley | cytosol | 50.98 | 10.61 |
| Solyc01g080850.2.1 | Tomato | plastid | 57.52 | 10.06 |
| KRG96600 | Soybean | nucleus | 56.21 | 9.87 |
| KRH68337 | Soybean | nucleus | 56.21 | 9.87 |
| GSMUA_Achr11P... | Banana | plastid | 53.59 | 9.52 |
| VIT_07s0005g02630.t01 | Wine grape | plastid | 54.25 | 9.5 |
| Os01t0321700-01 | Rice | cytosol, plastid | 49.67 | 9.39 |
| AT4G01810.2 | Thale cress | plastid | 52.94 | 9.2 |
| GSMUA_Achr6P20530_001 | Banana | plastid | 52.29 | 9.17 |
| CDY07119 | Canola | plastid | 52.29 | 9.15 |
| CDY22008 | Canola | plastid | 52.29 | 9.15 |
| Bra036313.1-P | Field mustard | cytosol, plastid | 52.29 | 9.01 |
| EES02883 | Sorghum | cytosol, plastid | 50.98 | 8.99 |
| TraesCS3A01G195200.1 | Wheat | plastid | 49.67 | 8.98 |
| TraesCS3B01G222900.1 | Wheat | plastid | 49.67 | 8.98 |
| TraesCS3D01G198500.1 | Wheat | plastid | 49.67 | 8.98 |
| Zm00001d009150_P002 | Maize | plastid | 49.67 | 8.78 |
| Solyc01g081070.2.1 | Tomato | cytosol, nucleus | 22.22 | 4.45 |
| Solyc09g092680.2.1 | Tomato | cytosol | 20.91 | 4.18 |
| Solyc03g005380.2.1 | Tomato | cytosol, golgi, plasma membrane | 20.91 | 4.11 |
| Solyc05g053830.2.1 | Tomato | cytosol, nucleus, plastid | 20.91 | 4.08 |
Protein Annotations
| EnsemblPlants:Solyc11g056380.1.1 | EnsemblPlantsGene:Solyc11g056380.1 | Gene3D:3.40.50.410 | InterPro:IPR036465 | InterPro:Sec23 | InterPro:vWFA_dom_sf |
| PANTHER:PTHR11141 | PANTHER:PTHR11141:SF6 | SEG:seg | SUPFAM:SSF53300 | UniParc:UPI000276AAA0 | UniProt:K4D8U9 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr11:-:45387704..45388165
Molecular Weight (calculated)
16552.0 Da
IEP (calculated)
9.560
GRAVY (calculated)
-0.165
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MCNVLPGDKS QTQESLKALI YGTDIYLSPM HASSEVAQKI FSSLRPYKLN IPEASRDRRL GTAIEVAPAI IQGPSTEMSR GVVKRAGDNN RIIVCTGGPN
101: TNVPGLAPFS SVPSLSSRML SVLIHILPSI SKKNEKCYDI LNDIRASTQQ SLP
101: TNVPGLAPFS SVPSLSSRML SVLIHILPSI SKKNEKCYDI LNDIRASTQQ SLP
001: MANLPKSSVN YPGTLTPLEP NRPSPQPDRT PVPHSPPVVA SPIPPRFPQP SFRPDQMSSP SMKSPSLLSP ANGIRTGSPI PRLSTPPGPP VFNTPVKPAA
101: VPFRTSPATP QPMAYSSANS SLPVSTPSFY SNGSSVGSQR DLPDVVRMEE PIAADSPYVL FSANKVLKQK KLANVASLGF GAIVSAGREI SPGPQIIQRD
201: PHRCLNCGAY SNPYSSILIG SGQWQCVICE NMNGSKGEYV ASSKNELQNF PELSLPLVDY VQTGNKRPGF VPASDSRTSA PVVLVIDECL DEPHLQHLQS
301: SLHAFVDSLP QTTRLGIILY GRTVSIYDFS EDSVASADVI SGAKSPSAES MKALIYGTGV YLSPMHASLK VAHEIFSSLR PYTLNVPEAS RDRCLGTAVE
401: AALAIIQGPS AEMSRGVVRR AGGNSRIIVC AGGPITYGPG SVPHSMSHPN YPYMEKTAIK WMENLGREAH RHNTVVDILC AGTCPLRVPI LQPLAKASGG
501: VLVLHDDFGE AFGVDLQRAA TRAAGSHGLL EVRCSDDILI TQVIGPGEEA HSETHETFKS DAALSIQMLS VEETQSFSLS MENKRDIKSD HVFFQFAFHY
601: SDVYQADVSR VITFKLPTVD SISAYLQSVE DEASAVLISK RTLLLAKNQK DAVDMRATVD ERIKDIALKF GSQVPKSKLY SFPKELSSLP ELLFHLRRGP
701: LLGNIIGHED ERSVLRNLFL NASFDLSLRM VAPRCLMHQE GGTFEELPAY DLSMQSDKAV ILDHGTDVFI WLGAELSADE VKSAAVLAAC RTLAEELTEF
801: RFPAPRILAF KEGSSQARYF VCRLIPAHKD PPYEQEARFP QIRTLTTEQR MKLKSSFIEF DEASFCEWMR SLKVVPPEPR
101: VPFRTSPATP QPMAYSSANS SLPVSTPSFY SNGSSVGSQR DLPDVVRMEE PIAADSPYVL FSANKVLKQK KLANVASLGF GAIVSAGREI SPGPQIIQRD
201: PHRCLNCGAY SNPYSSILIG SGQWQCVICE NMNGSKGEYV ASSKNELQNF PELSLPLVDY VQTGNKRPGF VPASDSRTSA PVVLVIDECL DEPHLQHLQS
301: SLHAFVDSLP QTTRLGIILY GRTVSIYDFS EDSVASADVI SGAKSPSAES MKALIYGTGV YLSPMHASLK VAHEIFSSLR PYTLNVPEAS RDRCLGTAVE
401: AALAIIQGPS AEMSRGVVRR AGGNSRIIVC AGGPITYGPG SVPHSMSHPN YPYMEKTAIK WMENLGREAH RHNTVVDILC AGTCPLRVPI LQPLAKASGG
501: VLVLHDDFGE AFGVDLQRAA TRAAGSHGLL EVRCSDDILI TQVIGPGEEA HSETHETFKS DAALSIQMLS VEETQSFSLS MENKRDIKSD HVFFQFAFHY
601: SDVYQADVSR VITFKLPTVD SISAYLQSVE DEASAVLISK RTLLLAKNQK DAVDMRATVD ERIKDIALKF GSQVPKSKLY SFPKELSSLP ELLFHLRRGP
701: LLGNIIGHED ERSVLRNLFL NASFDLSLRM VAPRCLMHQE GGTFEELPAY DLSMQSDKAV ILDHGTDVFI WLGAELSADE VKSAAVLAAC RTLAEELTEF
801: RFPAPRILAF KEGSSQARYF VCRLIPAHKD PPYEQEARFP QIRTLTTEQR MKLKSSFIEF DEASFCEWMR SLKVVPPEPR
Arabidopsis Description
Sec23/Sec24 protein transport family protein [Source:UniProtKB/TrEMBL;Acc:Q84WV4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.