Factsheet for Zm00001d009150_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES02883	Sorghum	cytosol, plastid	92.73	92.51
HORVU3Hr1G044780.1	Barley	cytosol	73.09	86.12
TraesCS3D01G198500.1	Wheat	plastid	81.52	83.45
TraesCS3A01G195200.1	Wheat	plastid	81.18	83.1
TraesCS3B01G222900.1	Wheat	plastid	80.95	82.86
Os01t0321700-01	Rice	cytosol, plastid	77.25	82.69
GSMUA_Achr11P...	Banana	plastid	71.02	71.43
VIT_07s0005g02630.t01	Wine grape	plastid	70.55	69.91
GSMUA_Achr6P20530_001	Banana	plastid	70.32	69.84
Solyc09g055810.1.1	Tomato	cytosol	6.35	69.62
KRG96600	Soybean	nucleus	68.13	67.74
KRH68337	Soybean	nucleus	68.01	67.62
Solyc01g080850.2.1	Tomato	plastid	66.74	66.06
AT4G01810.2	Thale cress	plastid	65.82	64.77
CDY22008	Canola	plastid	64.9	64.3
CDY07119	Canola	plastid	64.43	63.84
Bra036313.1-P	Field mustard	cytosol, plastid	65.13	63.51
Solyc02g021380.1.1	Tomato	plastid	5.08	54.32
Solyc11g056380.1.1	Tomato	cytosol	8.78	49.67
Zm00001d005902_P001	Maize	cytosol	15.36	17.45
Zm00001d013301_P002	Maize	cytosol	14.2	16.33
Zm00001d049155_P004	Maize	plastid	14.67	16.06
Zm00001d033975_P002	Maize	cytosol	14.32	15.82
Zm00001d004640_P001	Maize	cytosol, plastid	9.12	15.71
Zm00001d004639_P001	Maize	plastid	6.35	13.25

Protein Annotations

Gene3D:1.20.120.730	EntrezGene:103635100	Gene3D:2.30.30.380	Gene3D:3.40.20.10	Gene3D:3.40.50.410	MapMan:35.2
InterPro:ADF-H/Gelsolin-like_dom_sf	ProteinID:AQK91423.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005829	GO:GO:0006810
GO:GO:0006886	GO:GO:0006888	GO:GO:0007275	GO:GO:0008150	GO:GO:0008270	GO:GO:0009653
GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0010584	GO:GO:0015031	GO:GO:0016020
GO:GO:0016043	GO:GO:0030127	GO:GO:0048658	GO:GO:0070971	InterPro:Gelsolin-like_dom	InterPro:Gelsolin-like_dom_sf
InterPro:IPR029006	InterPro:IPR036465	UniProt:K7UW20	PFAM:PF00626	PFAM:PF04810	PFAM:PF04811
PFAM:PF04815	PFAM:PF08033	PANTHER:PTHR11141	PANTHER:PTHR11141:SF6	SUPFAM:SSF53300	SUPFAM:SSF81811
SUPFAM:SSF81995	SUPFAM:SSF82754	SUPFAM:SSF82919	InterPro:Sec23	InterPro:Sec23/24_helical_dom	InterPro:Sec23/24_helical_dom_sf
InterPro:Sec23/24_trunk_dom	InterPro:Sec23_24_beta_S	UniParc:UPI000220BE07	EnsemblPlantsGene:Zm00001d009150	EnsemblPlants:Zm00001d009150_P002	EnsemblPlants:Zm00001d009150_T002
InterPro:Znf_Sec23_Sec24	InterPro:Znf_Sec23_Sec24_sf	SEG:seg	InterPro:vWFA_dom_sf	:	:

Description

Sec23/Sec24 protein transport family protein

Coordinates

chr8:+:39632049..39636351

Molecular Weight (calculated)

93356.3 Da

IEP (calculated)

7.180

GRAVY (calculated)

-0.129

Length

866 amino acids

Sequence
(BLAST)

001: MEETPPGQRP QPPPAHASPP FASAPFTPPP RVFSPGLAAA RGTPSPGSGP GHALPHLSTP PGPPVFSSPL RPAAVPFRAT PASPHPVSFA ASGGYSSSSS
101: ATAATTASLP TSSAPHFLNG AATLHGDHAP APSSIQGDGL DSPYVQFSAN KVLKQKKLLN APSLGFGALV SPGKEVSPGP EVVERDPRRC LNCGAYVNLY
201: CDVQIGSGQW QCVICKKLNG SEGEFVVSSK QDLLQWPELA STTVDYVQVG NRRPGFVPVS DTRVSGPIFI LIDECLDEAH LQHLQGSLHA FVDSLPPTAK
301: IGIITYGRTV SVYDFSEGAA VSADVLPGNK SPTHESLKAL IYGTGVYLSP IHASLPVAHT IFSSLRPYQL SVPEVLRDRC VGAAVEVALG IIQGPSVELS
401: RGIIKRSGGN CRILVCAGGP STFGPGSVPH SAKHPNYAYL EKTAMKWMES LGHEAQRHST VVDIFCAGQC PVRVPVLQPL AKCSGGVLLA HDDFGEAFGV
501: NLQRASTRAA GSHGLFEIRC SDNMYVTQVI GPGEEASPDS HETFKHGSSF CIQMHSVEET QSFSVSMETK ADIKSDFVFF QFAVHYSNIY QTEITRVITM
601: RLQTDDGLSA YLASVQEDVA AVIIGKRTVL RARTASDAID MRLSIDERVK DIALKFGSQA PKSKLYRFPK ELASLPECLF HLKRGPLLGS IIGHEDERSV
701: LRNLFLNASF DLSLRMLAPR CIMHREGGTF EELPAYDLVM QSNAAVVLDH GTDIFIWLGA ELAAQEGQSA AALAACRTLA EELSEKRFPA PRILSFKQGS
801: SQARYFVSRL IPAHKDPTYE QESRFPQLRT LTPEQRARLK SSFIQFDDYS FCEWMRSLKL VPPEPS

Best Arabidopsis Sequence Match ( AT4G01810.3 )
(BLAST)

001: MANLPKSSVN YPGTLTPLEP NRPSPQPDRT PVPHSPPVVA SPIPPRFPQP SFRPDQMSSP SMKSPSLLSP ANGIRTGSPI PRLSTPPGPP VFNTPVKPAA
101: VPFRTSPATP QPMAYSSANS SLPVSTPSFY SNGSSVGSQR DLPDVVRMEE PIAADSPYVL FSANKVLKQK KLANVASLGF GAIVSAGREI SPGPQIIQRD
201: PHRCLNCGAY SNPYSSILIG SGQWQCVICE NMNGSKGEYV ASSKNELQNF PELSLPLVDY VQTGNKRPGF VPASDSRTSA PVVLVIDECL DEPHLQHLQS
301: SLHAFVDSLP QTTRLGIILY GRTVSIYDFS EDSVASADVI SGAKSPSAES MKALIYGTGV YLSPMHASLK VAHEIFSSLR PYTLNVPEAS RDRCLGTAVE
401: AALAIIQGPS AEMSRGVVRR AGGNSRIIVC AGGPITYGPG SVPHSMSHPN YPYMEKTAIK WMENLGREAH RHNTVVDILC AGTCPLRVPI LQPLAKASGG
501: VLVLHDDFGE AFGVDLQRAA TRAAGSHGLL EVRCSDDILI TQVIGPGEEA HSETHETFKS DAALSIQMLS VEETQSFSLS MENKRDIKSD HVFFQFAFHY
601: SDVYQADVSR VITFKLPTVD SISAYLQSVE DEASAVLISK RTLLLAKNQK DAVDMRATVD ERIKDIALKF GSQVPKSKLY SFPKELSSLP ELLFHLRRGP
701: LLGNIIGHED ERSVLRNLFL NASFDLSLRM VAPRCLMHQE GGTFEELPAY DLSMQSDKAV ILDHGTDVFI WLGAELSADE VKSAAVLAAC RTLAEELTEF
801: RFPAPRILAF KEGSSQARYF VCRLIPAHKD PPYEQEARFP QIRTLTTEQR MKLKSSFIEF DEASFCEWMR SLKVVPPEPR

Arabidopsis Description

Sec23/Sec24 protein transport family protein [Source:UniProtKB/TrEMBL;Acc:Q84WV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.