Factsheet for Zm00001d033975_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008871_P001
Zm00001d010783_P001
Zm00001d038803_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43670.1	Zm00001d008871_P001	AT3G16310.1	21798944
AT5G43670.1	Zm00001d010783_P001	AT3G16310.1	21798944
AT5G43670.1	Zm00001d038803_P001	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013301_P002	Maize	cytosol	90.82	94.56
EER93475	Sorghum	cytosol	90.31	94.02
Os03t0742800-02	Rice	cytosol	84.18	87.19
TraesCS5D01G391900.1	Wheat	cytosol	81.38	84.84
TraesCS5B01G386700.1	Wheat	cytosol	80.99	84.44
TraesCS5A01G382500.2	Wheat	cytosol	80.87	84.31
GSMUA_Achr4P11140_001	Banana	cytosol	28.7	81.82
HORVU5Hr1G094210.8	Barley	cytosol, plastid	65.43	68.4
KRG97332	Soybean	cytosol	55.99	60.14
Bra033691.1-P	Field mustard	cytosol	55.99	59.32
CDY22339	Canola	cytosol	55.87	59.19
Solyc03g005380.2.1	Tomato	cytosol, golgi, plasma membrane	58.16	58.61
CDX94717	Canola	cytosol	55.1	57.45
AT5G43670.1	Thale cress	cytosol	55.99	55.29
GSMUA_Achr4P11150_001	Banana	cytosol	23.09	46.17
Zm00001d005902_P001	Maize	cytosol	43.11	44.36
Zm00001d049155_P004	Maize	plastid	42.6	42.23
VIT_05s0020g04710.t01	Wine grape	plasma membrane	60.71	42.01
PGSC0003DMT400034845	Potato	cytosol	12.88	41.06
Zm00001d004640_P001	Maize	cytosol, plastid	24.11	37.57
Zm00001d004639_P001	Maize	plastid	17.86	33.73
Zm00001d009150_P002	Maize	plastid	15.82	14.32

Protein Annotations

Gene3D:1.20.120.730	EntrezGene:100191458	MapMan:22.4.1.3.1	Gene3D:3.40.20.10	UniProt:A0A1D6L3P4	InterPro:ADF-H/Gelsolin-like_dom_sf
GO:GO:0000139	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0006886	GO:GO:0006888	GO:GO:0008150
GO:GO:0008270	GO:GO:0009987	GO:GO:0015031	GO:GO:0016020	GO:GO:0016043	GO:GO:0030127
GO:GO:0090114	InterPro:Gelsolin-like_dom	InterPro:Gelsolin-like_dom_sf	InterPro:IPR029006	InterPro:IPR036465	ProteinID:ONM09063.1
PFAM:PF00626	PFAM:PF04810	PFAM:PF04811	PFAM:PF04815	PFAM:PF08033	PANTHER:PTHR11141
PANTHER:PTHR11141:SF4	SUPFAM:SSF53300	SUPFAM:SSF81811	SUPFAM:SSF81995	SUPFAM:SSF82754	SUPFAM:SSF82919
InterPro:Sec23	InterPro:Sec23/24_helical_dom	InterPro:Sec23/24_helical_dom_sf	InterPro:Sec23/24_trunk_dom	InterPro:Sec23_24_beta_S	InterPro:Sec23_C
UniParc:UPI0008457B4A	EnsemblPlantsGene:Zm00001d033975	EnsemblPlants:Zm00001d033975_P002	EnsemblPlants:Zm00001d033975_T002	InterPro:Znf_Sec23_Sec24	InterPro:Znf_Sec23_Sec24_sf
SEG:seg	InterPro:vWFA_dom_sf	:	:	:	:

Description

Sec23/Sec24 protein transport family protein

Coordinates

chr1:+:279918811..279922411

Molecular Weight (calculated)

87292.9 Da

IEP (calculated)

7.310

GRAVY (calculated)

-0.063

Length

784 amino acids

Sequence
(BLAST)

001: MDFAELEAVE GLRWPWHSWP PTTPAAASLV VPTSVLCSPL QHPTAPDLLP LLPYAPLRCA SPGCGAALNP FSRVHHGSAR WSCAFCGAAA NPFPRLLAPD
101: ALPAELFPTH SSVEYLLPPD PAEPGGPGPP ALVFVIDAAT AAEELTVLKD EVRRLMQGLP EGIRVALVTF AASVWVHDLG FEGCARVVVL NGERELESDK
201: HSSFTSIHNL FLPQSALKFE YLPLAQYQWQ LIQKLLGIHR SQYKNLAMPR STEVQRFLLP VSECEFNITS AIEDLSSMPA CPRGHRPLRA TGAAISTAIA
301: LLEGCCSPST GGRIMIFTSG PATVGPGCVV ETDLGKTIRS HRDIFNSNAP LTDKARDFYK KVAKRLTDHA LVLDLFACSL DQVGAAELRN PIEVTGGLMV
401: HTESFEYEQF KSCFRHMFRR EGTNYLNMNF NATIEIVTSK EVKICGALGP CISLRRKNNS VSDKEIGEGG SNYWKTSSLS SKTSIAFLFR VDCNHKADPP
501: TVFFIQFMTR YRHGDGSYRL RVTTVARRWA APRSPEIAAG FDQEAAAAVM ARLAVYRAET YHVRDVIRWL DKMLIRFTAK FGNYVPEDPS TFRLSTNFSL
601: YPQFMYYLRR SQFIDVFNSS PDETAFFRLM LNREGVVGSL IMIQPTLFQY SFDGPPIPVL LDVSSISPDV ILLFDSYFYI VIHYGSKIAQ WRKLGYHKDP
701: NHENLRKLLE APEVDAEALL VDRFPVPKLI KCDHHGSQAR FLLARLNPSV TQKTQFSKGS EVIFTDDVSL QVFIEHLQEL AVQG

Best Arabidopsis Sequence Match ( AT1G05520.1 )
(BLAST)

001: MSEMASMDPE GIDGVRMTWN VWPRTKVEAS KCVIPVAACI SPIRYHRDIP SVEYAPLRCR ICTAALNPFA RVDFLAKIWI CPICFQRNHF PPHYHVMSET
101: NVPCELYPQY TTVEYTLPNP SQPTGVGNFD QTGAVSGQPS PSVFVFVLDT CMIEEEFGYA KSALKQAIGL LPENALVGFV SFGTQAHVHE LGFSDLTKVY
201: VFRGDKEISK DQVLEQLGLG ASGRRNPVGG FPMGRDNSAN FGYSGVNRFL LPASDCEFTI DLLLEELQTD QWPVQAGRRQ SRCTGVAISV ATGLLGACFP
301: GTGARIVALI GGPCSEGPGT IVSKDLSEPL RSHKDLDKDA APFYKKAEKF YDALANQLVN QGHVLDLFAS ALDQVGVAEM KAAVERTGGL VVLSESFGHS
401: VFKDSFKRVF EDGEESLGLC FNGTLEICCS KDIKIQGIIG PCASLQKKGP SVADTVIGEG NTTQWKMCGL DKRTCLTVFF DLSSSDQSSA PGGVNNQLYL
501: QFMTSYQNSK GKTLQRVTTV TRQWVDTGLS TEELVQGFDQ ETAAVVVARL ASLKMETEEG FDATRWLDRN LIRLCSKFGD YRKDDPASFT LNPNFSLFPQ
601: FTFNLRRSQF VQVFNNSPDE TAYNRMLLNR ENISNAAVMI QPSLTTYSFN SLPQPALLDV ASIGADRILL LDSYISVVVF HGMTIAQWRN LGYQNQPEHQ
701: AFAQLLEAPQ EDAQMIIRDR FPVPRLVVCD QHGSQARFLL AKLNPSATYN NASEMNAGSD IIFTDDVSLQ VFFQHLQKLA VQS

Arabidopsis Description

At1g05520/T25N20_16 [Source:UniProtKB/TrEMBL;Acc:Q8H0S3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.