CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
endoplasmic reticulum 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES02290
EES19830

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43670.1	EES02290	AT3G16310.1	21798944
AT5G43670.1	EES19830	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013301_P002	Maize	cytosol	97.48	97.48
Zm00001d033975_P002	Maize	cytosol	94.02	90.31
Os03t0742800-02	Rice	cytosol	89.38	88.9
TraesCS5D01G391900.1	Wheat	cytosol	87.25	87.37
TraesCS5A01G382500.2	Wheat	cytosol	87.12	87.23
TraesCS5B01G386700.1	Wheat	cytosol	85.52	85.64
GSMUA_Achr4P11140_001	Banana	cytosol	29.88	81.82
HORVU5Hr1G094210.8	Barley	cytosol, plastid	70.12	70.4
KRG97332	Soybean	cytosol	59.1	60.96
Bra033691.1-P	Field mustard	cytosol	59.23	60.27
CDY22339	Canola	cytosol	59.1	60.14
Solyc03g005380.2.1	Tomato	cytosol, golgi, plasma membrane	61.35	59.38
CDX94717	Canola	cytosol	58.43	58.51
AT5G43670.1	Thale cress	cytosol	59.23	56.17
GSMUA_Achr4P11150_001	Banana	cytosol	23.9	45.92
OQU80636	Sorghum	cytosol	45.29	44.69
EER96867	Sorghum	cytosol	45.02	44.49
VIT_05s0020g04710.t01	Wine grape	plasma membrane	64.94	43.16
OQU83385	Sorghum	cytosol, plastid	44.89	42.62
PGSC0003DMT400034845	Potato	cytosol	13.55	41.46
EER99932	Sorghum	cytosol	17.0	35.36
EES02883	Sorghum	cytosol, plastid	16.6	14.4

Protein Annotations

Gene3D:1.20.120.730	Gene3D:2.30.30.380	Gene3D:2.60.40.1670	MapMan:22.4.1.3.1	Gene3D:3.40.20.10	Gene3D:3.40.50.410
EntrezGene:8085960	InterPro:ADF-H/Gelsolin-like_dom_sf	UniProt:C5X188	EnsemblPlants:EER93475	ProteinID:EER93475	ProteinID:EER93475.1
GO:GO:0000139	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0006886	GO:GO:0006888	GO:GO:0008150
GO:GO:0008270	GO:GO:0009987	GO:GO:0015031	GO:GO:0016020	GO:GO:0016043	GO:GO:0030127
GO:GO:0090114	InterPro:Gelsolin-like_dom	InterPro:Gelsolin-like_dom_sf	InterPro:IPR029006	InterPro:IPR036465	PFAM:PF00626
PFAM:PF04810	PFAM:PF04811	PFAM:PF04815	PFAM:PF08033	PANTHER:PTHR11141	PANTHER:PTHR11141:SF4
EnsemblPlantsGene:SORBI_3001G094900	SUPFAM:SSF53300	SUPFAM:SSF81811	SUPFAM:SSF81995	SUPFAM:SSF82754	SUPFAM:SSF82919
unigene:Sbi.20475	InterPro:Sec23	InterPro:Sec23/24_helical_dom	InterPro:Sec23/24_helical_dom_sf	InterPro:Sec23/24_trunk_dom	InterPro:Sec23_24_beta_S
InterPro:Sec23_C	UniParc:UPI0001A826F2	RefSeq:XP_002466477.1	InterPro:Znf_Sec23_Sec24	InterPro:Znf_Sec23_Sec24_sf	SEG:seg
InterPro:vWFA_dom_sf	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:7287676..7291556

Molecular Weight (calculated)

83161.8 Da

IEP (calculated)

6.933

GRAVY (calculated)

-0.034

Length

753 amino acids

Sequence
(BLAST)

001: MDFAELEAVE GLRWPWHSWP PTAPAAASLV VPTAVLCSPL QHPTAPDLLP LLPYAPLRCA TAGCGAALNP FSRVHHGSAR WSCPFCGAAA NPFPRLLAPD
101: ALPAELFPTH SSVEYALPPD PAEAGGPGPP ALVFVIDAAT AAEELAVLKD EVRRVVQGLP EGIRVALVTF AASVWVHDLG FEGCARVVVL NGERELESDK
201: IQELLGVHRS PYKKLAMPRS TEAQRFLLPV SECEFNITSA IEDLGSMSAC PRGHRPLRAT GAAISTAIAL LEGCCSPSTG GRIMVFTSGP ATVGPGCVVE
301: TDLGKAIRSH RDIFNSNAPL TDKARDFYKK VAKRLADHAL VLDLFACSLD QVGAAELRNP IEVSGGLMVH TESFESEQFK SCFRHMFKRE GTNYLNMNFN
401: ATIEIVTSKE VKICGALGPC ISLRRKNSSV SDKEIGEGGT NYWKTSSLSS KTSIAFFFRV DCSHKAEPPT VFFIQFMTRY RHGDGSYRLR VTTVARRWAA
501: PRSPEIAAGF DQEAAATVMA RLAVYRAETY HVRDVIRWLD KMLIRFTAKF GNYVPEDPST FRLSTNFSLY PQFMYYLRRS QFIDVFNSSP DETAFFRLML
601: NREGVVGSLI MIQPTLFQYS FDGPPIPVLL DVSSISPDVI LLFDSYFYIV IHYGSKIAQW RKLGYHKDPN HENLRKLLEA PEVDAEALLV DRFPVPKLIK
701: CDQHGSQARF LLARLNPSVT QKTQLSEGSE VIFTDDVSLQ VFIEHLQELA VQS

Best Arabidopsis Sequence Match ( AT5G43670.1 )
(BLAST)

001: MDFLELEAIE GLRWSWNSWP TTKSDCESLV VPLSIMYTPL MHFSELPTIP YDPLICSRCG AVLNPYARVD YQSRIWSCPF CFHKNLFPRS YSGITETNLP
101: AELFPTYSAV EYSPLPSRQS GSNTTTPTAA ASWSNGFNQG VRSMPSNSSF SSLASSTVGG GGGVISELGP AFVFVVDASM VEDELRAVRS DVLFVIEQLP
201: ENCLVALITF DSMVRVYDLG FSECSKVVVF HGERDLSPDQ IQQFLGLGYS KQFHHGKMSA IRKQSFLLPL VECEFNLTSA FEEIIPLVDV KPGHRPHRST
301: GAAISTALGL LEGCSVTTGS RIMVFTSGPA TRGPGIIVDS DLSNSIRTHR DIITGHVSYY DKSCGFYKKL AKRLCDSSVV LDVFACSLDQ VGAAELRYAV
401: EMSGGFLLLG ETFESEQFKK CLRHIFIRDA DGNLSMYFDV SLEVVTTKDM RICGALGPVV SLRQKNDIVS ETEIGEGGTY MWKTSTVTNK TCVSFFFHVS
501: NEQNRKPQPG SAFFIQFITR YRYGNGAMRK RVTTVARRWV AGKSPEISSS FDQETAASVM ARLAINRAEE CHARDVITWL DNGLIRFASR FGDYIQEDPS
601: SFRLTPNFSL YPQFMFYLRR SQFLDVFNNS PDETGFFRLM LNREGVVNSI IMIQPTLLRY SFDGPPVPVL LDIRSVTPDV ILLFDSYFYV VIHHGSKIAQ
701: WRKLEYHKDP SHETFRNLLE APEIDAAQLV TDRIPMPRIV RCDQHGSQAR FLLAKLNPSV TQKTDHTGGS DIVLTDDMSL QDFLEDLQSL AVKG

Arabidopsis Description

At5g43670 [Source:UniProtKB/TrEMBL;Acc:Q84WI4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.