Factsheet for Solyc03g005380.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane, golgi

Predictor Summary:

nucleus 1
endoplasmic reticulum 1
cytosol 1
plasma membrane 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g120880.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43670.1	Solyc03g120880.2.1	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034845	Potato	cytosol	29.31	92.68
GSMUA_Achr4P11140_001	Banana	cytosol	25.32	71.64
KRG97332	Soybean	cytosol	61.95	66.03
Bra033691.1-P	Field mustard	cytosol	62.34	65.54
CDY22339	Canola	cytosol	61.95	65.14
CDX94717	Canola	cytosol	62.21	64.36
AT5G43670.1	Thale cress	cytosol	64.4	63.1
TraesCS5D01G391900.1	Wheat	cytosol	60.03	62.1
TraesCS5B01G386700.1	Wheat	cytosol	59.51	61.57
TraesCS5A01G382500.2	Wheat	cytosol	59.38	61.44
EER93475	Sorghum	cytosol	59.38	61.35
Zm00001d013301_P002	Maize	cytosol	59.25	61.22
Os03t0742800-02	Rice	cytosol	59.38	61.03
Zm00001d033975_P002	Maize	cytosol	58.61	58.16
HORVU5Hr1G094210.8	Barley	cytosol, plastid	50.26	52.13
VIT_05s0020g04710.t01	Wine grape	plasma membrane	73.01	50.13
GSMUA_Achr4P11150_001	Banana	cytosol	23.65	46.94
Solyc09g092680.2.1	Tomato	cytosol	43.44	44.13
Solyc01g081070.2.1	Tomato	cytosol, nucleus	42.67	43.46
Solyc05g053830.2.1	Tomato	cytosol, nucleus, plastid	43.19	42.86
Solyc11g056380.1.1	Tomato	cytosol	4.11	20.91
Solyc09g055810.1.1	Tomato	cytosol	1.8	17.72
Solyc02g021380.1.1	Tomato	plastid	1.8	17.28
Solyc01g080850.2.1	Tomato	plastid	15.3	13.6

Protein Annotations

Gene3D:1.20.120.730	MapMan:22.4.1.3.1	Gene3D:3.40.20.10	InterPro:ADF-H/Gelsolin-like_dom_sf	GO:GO:0000139	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0006810	GO:GO:0006886	GO:GO:0006888	GO:GO:0008150	GO:GO:0008270	GO:GO:0009987
GO:GO:0015031	GO:GO:0016020	GO:GO:0016043	GO:GO:0030127	GO:GO:0090114	InterPro:Gelsolin-like_dom
InterPro:Gelsolin-like_dom_sf	InterPro:IPR029006	InterPro:IPR036465	UniProt:K4BDW2	PFAM:PF00626	PFAM:PF04810
PFAM:PF04811	PFAM:PF04815	PFAM:PF08033	PANTHER:PTHR11141	PANTHER:PTHR11141:SF4	SUPFAM:SSF53300
SUPFAM:SSF81811	SUPFAM:SSF81995	SUPFAM:SSF82754	SUPFAM:SSF82919	InterPro:Sec23	InterPro:Sec23/24_helical_dom
InterPro:Sec23/24_helical_dom_sf	InterPro:Sec23/24_trunk_dom	InterPro:Sec23_24_beta_S	InterPro:Sec23_C	EnsemblPlantsGene:Solyc03g005380.2	EnsemblPlants:Solyc03g005380.2.1
UniParc:UPI000276907D	InterPro:Znf_Sec23_Sec24	InterPro:Znf_Sec23_Sec24_sf	SEG:seg	InterPro:vWFA_dom_sf	:

Description

No Description!

Coordinates

chr3:+:216942..222990

Molecular Weight (calculated)

86658.1 Da

IEP (calculated)

6.177

GRAVY (calculated)

-0.011

Length

778 amino acids

Sequence
(BLAST)

001: MDFVELEAIE GLRWSWNSWP VSKSEASGLI IPLSIMCTPL MHFNELPVLP YDPLICTQCG AVLNPYARVD YQSRIWVCPF CYRKNPFPKS YLGINENNIP
101: AELFPTYSTV EYHLGKKGLA QNPNSSSNFG NMSLSSKMPS FSSTSSSLDW AGYGIGPAFV FVVDACTSDE ELGVVKNELL HVIAQLPETA LVGLVVFDSM
201: VRVYDLGFGE CCRVVMFHGE RELSSEQTKQ LLGIHRMKYQ AGMVHMAPKQ GFLIPLSEGE FSITSAIEDI HSSPQVMPGH RPLRATGVAV SVAVGLLEGC
301: LVSAGSRIMV FTSGPATIGP GMIVNSDFGN TIRNQRDIGN GYAPYYKKSS DFYKHIARRL SDSSIALDLF ACSLDQVGAA ELRAPVESSG GFMMLTESFD
401: SDQFRKCLRH IFSHDEVGNL KMCLDATIEI VTTKDVKICG ALGSCVSLQK KNGSVSDKEI GEGATYMWKL GTLTDKMCIA FFFEVGDEQK AQPSSAFFIQ
501: FITNYRYGSM GIRKRVITAA RRWVGNHSPE IAAGFDQEAA ASVMARLAID RAESNFSQDV VRWLDKRLIR FASKFGDYIP EDPSSFRLAT NLSLFPQFIY
601: YLRRSQFIDV FNCTPDETAF FRLLLNREGV VRSLIMVQPT LFQYSFDGPP VPVLLDICSV SPDVILLFDS YFYVVIHYGS KIAQWRKLGY DKDPSHDSFR
701: KLLEAPEIDA EQLVSERIPV PKLVKCDQHS SQARFLLARL NPSVTHNSTY TQGSDIIFTE ELSLQVFIEH LQALAVQG

Best Arabidopsis Sequence Match ( AT5G43670.1 )
(BLAST)

001: MDFLELEAIE GLRWSWNSWP TTKSDCESLV VPLSIMYTPL MHFSELPTIP YDPLICSRCG AVLNPYARVD YQSRIWSCPF CFHKNLFPRS YSGITETNLP
101: AELFPTYSAV EYSPLPSRQS GSNTTTPTAA ASWSNGFNQG VRSMPSNSSF SSLASSTVGG GGGVISELGP AFVFVVDASM VEDELRAVRS DVLFVIEQLP
201: ENCLVALITF DSMVRVYDLG FSECSKVVVF HGERDLSPDQ IQQFLGLGYS KQFHHGKMSA IRKQSFLLPL VECEFNLTSA FEEIIPLVDV KPGHRPHRST
301: GAAISTALGL LEGCSVTTGS RIMVFTSGPA TRGPGIIVDS DLSNSIRTHR DIITGHVSYY DKSCGFYKKL AKRLCDSSVV LDVFACSLDQ VGAAELRYAV
401: EMSGGFLLLG ETFESEQFKK CLRHIFIRDA DGNLSMYFDV SLEVVTTKDM RICGALGPVV SLRQKNDIVS ETEIGEGGTY MWKTSTVTNK TCVSFFFHVS
501: NEQNRKPQPG SAFFIQFITR YRYGNGAMRK RVTTVARRWV AGKSPEISSS FDQETAASVM ARLAINRAEE CHARDVITWL DNGLIRFASR FGDYIQEDPS
601: SFRLTPNFSL YPQFMFYLRR SQFLDVFNNS PDETGFFRLM LNREGVVNSI IMIQPTLLRY SFDGPPVPVL LDIRSVTPDV ILLFDSYFYV VIHHGSKIAQ
701: WRKLEYHKDP SHETFRNLLE APEIDAAQLV TDRIPMPRIV RCDQHGSQAR FLLAKLNPSV TQKTDHTGGS DIVLTDDMSL QDFLEDLQSL AVKG

Arabidopsis Description

At5g43670 [Source:UniProtKB/TrEMBL;Acc:Q84WI4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.