CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX97739
CDY30157

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43670.1	CDX97739	AT3G16310.1	21798944
AT5G43670.1	CDY30157	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033691.1-P	Field mustard	cytosol	99.32	99.32
CDX94717	Canola	cytosol	93.51	92.02
AT5G43670.1	Thale cress	cytosol	86.22	80.35
GSMUA_Achr4P11140_001	Banana	cytosol	24.46	65.82
KRG97332	Soybean	cytosol	62.43	63.29
Solyc03g005380.2.1	Tomato	cytosol, golgi, plasma membrane	65.14	61.95
Zm00001d013301_P002	Maize	cytosol	60.68	59.63
EER93475	Sorghum	cytosol	60.14	59.1
Os03t0742800-02	Rice	cytosol	60.41	59.05
TraesCS5D01G391900.1	Wheat	cytosol	59.86	58.91
TraesCS5B01G386700.1	Wheat	cytosol	59.59	58.64
TraesCS5A01G382500.2	Wheat	cytosol	59.46	58.51
Zm00001d033975_P002	Maize	cytosol	59.19	55.87
PGSC0003DMT400034845	Potato	cytosol	17.7	53.25
HORVU5Hr1G094210.8	Barley	cytosol, plastid	49.59	48.93
CDY12077	Canola	cytosol	45.68	45.86
GSMUA_Achr4P11150_001	Banana	cytosol	24.19	45.66
CDY12738	Canola	cytosol	45.41	45.65
CDX90271	Canola	cytosol	45.27	45.39
VIT_05s0020g04710.t01	Wine grape	plasma membrane	68.65	44.84
CDY15544	Canola	cytosol	45.95	44.33
CDX86574	Canola	cytosol	45.95	44.33
CDY01197	Canola	cytosol	45.27	43.96
CDY13800	Canola	cytosol	42.57	41.78
CDY12241	Canola	cytosol	32.16	39.14
CDY59754	Canola	cytosol	41.35	32.31
CDY64015	Canola	cytosol	4.86	25.9
CDY22008	Canola	plastid	15.95	13.5
CDY07119	Canola	plastid	15.81	13.39

Protein Annotations

Gene3D:1.20.120.730	Gene3D:2.30.30.380	Gene3D:2.60.40.1670	MapMan:22.4.1.3.1	Gene3D:3.40.20.10	Gene3D:3.40.50.410
GO:A0A078GAD1	UniProt:A0A078GAD1	InterPro:ADF-H/Gelsolin-like_dom_sf	EnsemblPlants:CDY22339	ProteinID:CDY22339	ProteinID:CDY22339.1
GO:GO:0000139	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0006886	GO:GO:0006888	GO:GO:0008150
GO:GO:0008270	GO:GO:0009987	GO:GO:0015031	GO:GO:0016020	GO:GO:0016043	GO:GO:0030127
GO:GO:0090114	EnsemblPlantsGene:GSBRNA2T00018815001	InterPro:Gelsolin-like_dom	InterPro:Gelsolin-like_dom_sf	InterPro:IPR029006	InterPro:IPR036465
PFAM:PF00626	PFAM:PF04810	PFAM:PF04811	PFAM:PF04815	PFAM:PF08033	PANTHER:PTHR11141
PANTHER:PTHR11141:SF4	SUPFAM:SSF53300	SUPFAM:SSF81811	SUPFAM:SSF81995	SUPFAM:SSF82754	SUPFAM:SSF82919
InterPro:Sec23	InterPro:Sec23/24_helical_dom	InterPro:Sec23/24_helical_dom_sf	InterPro:Sec23/24_trunk_dom	InterPro:Sec23_24_beta_S	InterPro:Sec23_C
UniParc:UPI0004EE9DDA	InterPro:Znf_Sec23_Sec24	InterPro:Znf_Sec23_Sec24_sf	InterPro:vWFA_dom_sf	:	:

Description

BnaA06g36610DBnaA06g36610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GAD1]

Coordinates

chrLK032130:-:201349..203952

Molecular Weight (calculated)

83314.7 Da

IEP (calculated)

6.055

GRAVY (calculated)

-0.113

Length

740 amino acids

Sequence
(BLAST)

001: MDFLELEAIE GLRWTWNSWP TTKPDCESLV VPLSIMYTPL MRFSELPTIP YDPLICSRCA AVLNPYARVD YRSRIWACPF CFHKNPFPRS YAGITETNLP
101: AELFPTYSAV EYSPPTDGVA PWSSPGPAFV FVVDASMAEE ELRAMRSEVL LVVEQLPESS LVGLVTFDSM VRVYDLGFSD CSRVVVFHGD RELPPQQIQH
201: YLGLGKMSKQ SFLLPLEECE FNLTSAFEEI APLVDVKPGH RPHRSTGTAI STALGLLEGC CVTTGARIMV FTSGPATRGP GIVVSSDLNH SIRTHRDIIT
301: GQVPYYDRSC KFYKRIAKRL CDSSAALDLF ACSLDQVGAA ELRYAVEMSG GFLLLGETFE SDQFKNCLRH IFSRDGDGNL NMCFDVTLEV VTTKDIKICG
401: ALGPVVSLTR KNDIVSDTEI GESGTYTWKT STATNKTCVS FFFQVSNEQN RKPKPGSAFF IQFITRYRYG NGGVKKRVTT VARRWVAGKS PEISSGFDQE
501: TAVSVMARLA INRAEECYAR DVIRWLDDGL IRFASRFGDY IQEDPSSFRL TPNFSLYPQF MFYLRRSQFL DVFNNSPDET GFFRLMLNRE GVVNSIIMIQ
601: PTLLRYSFDG PPVPVLLDIR SVTPDAILLF DSYFYVVIHH GLKIAQWRKQ EYHKDSNHET FRNLLEAPEM DVVQLVSDRI PMPRIVRCDQ HGSQARFLLA
701: KLNPSVTQKT DHTGGSDVVL TDDLCLEDFL ADLQSLAVRK

Best Arabidopsis Sequence Match ( AT5G43670.1 )
(BLAST)

001: MDFLELEAIE GLRWSWNSWP TTKSDCESLV VPLSIMYTPL MHFSELPTIP YDPLICSRCG AVLNPYARVD YQSRIWSCPF CFHKNLFPRS YSGITETNLP
101: AELFPTYSAV EYSPLPSRQS GSNTTTPTAA ASWSNGFNQG VRSMPSNSSF SSLASSTVGG GGGVISELGP AFVFVVDASM VEDELRAVRS DVLFVIEQLP
201: ENCLVALITF DSMVRVYDLG FSECSKVVVF HGERDLSPDQ IQQFLGLGYS KQFHHGKMSA IRKQSFLLPL VECEFNLTSA FEEIIPLVDV KPGHRPHRST
301: GAAISTALGL LEGCSVTTGS RIMVFTSGPA TRGPGIIVDS DLSNSIRTHR DIITGHVSYY DKSCGFYKKL AKRLCDSSVV LDVFACSLDQ VGAAELRYAV
401: EMSGGFLLLG ETFESEQFKK CLRHIFIRDA DGNLSMYFDV SLEVVTTKDM RICGALGPVV SLRQKNDIVS ETEIGEGGTY MWKTSTVTNK TCVSFFFHVS
501: NEQNRKPQPG SAFFIQFITR YRYGNGAMRK RVTTVARRWV AGKSPEISSS FDQETAASVM ARLAINRAEE CHARDVITWL DNGLIRFASR FGDYIQEDPS
601: SFRLTPNFSL YPQFMFYLRR SQFLDVFNNS PDETGFFRLM LNREGVVNSI IMIQPTLLRY SFDGPPVPVL LDIRSVTPDV ILLFDSYFYV VIHHGSKIAQ
701: WRKLEYHKDP SHETFRNLLE APEIDAAQLV TDRIPMPRIV RCDQHGSQAR FLLAKLNPSV TQKTDHTGGS DIVLTDDMSL QDFLEDLQSL AVKG

Arabidopsis Description

At5g43670 [Source:UniProtKB/TrEMBL;Acc:Q84WI4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.