CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0433500-01	Rice	cytosol, plasma membrane	34.05	58.97
CDX86574	Canola	cytosol	64.8	51.37
CDY15544	Canola	cytosol	64.64	51.24
KRG97365	Soybean	cytosol, endoplasmic reticulum, nucleus	62.83	49.87
KRH31551	Soybean	endoplasmic reticulum	62.66	49.67
GSMUA_Achr10P...	Banana	cytosol, golgi, plastid	53.29	49.54
VIT_05s0062g00130.t01	Wine grape	cytosol	62.01	48.9
CDX90271	Canola	cytosol	57.57	47.43
CDY12077	Canola	cytosol	57.4	47.35
CDY12738	Canola	cytosol	57.24	47.28
PGSC0003DMT400080958	Potato	cytosol	58.22	46.34
Solyc05g053830.2.1	Tomato	cytosol, nucleus, plastid	59.54	46.17
PGSC0003DMT400040714	Potato	cytosol	59.54	46.17
Solyc09g092680.2.1	Tomato	cytosol	57.89	45.95
CDY01197	Canola	cytosol	57.24	45.67
GSMUA_Achr8P33210_001	Banana	cytosol	54.77	45.43
GSMUA_Achr9P30270_001	Banana	plastid	52.63	45.39
TraesCS4D01G151400.1	Wheat	golgi	57.07	44.37
TraesCS4B01G163100.3	Wheat	plastid	57.07	44.37
TraesCS4A01G151800.3	Wheat	cytosol, plastid	56.91	44.02
Zm00001d004640_P001	Maize	cytosol, plastid	36.35	43.94
OQU83385	Sorghum	cytosol, plastid	56.91	43.63
GSMUA_Achr11P...	Banana	cytosol	15.62	43.38
Zm00001d049155_P004	Maize	plastid	56.41	43.36
GSMUA_Achr1P25630_001	Banana	plastid	52.3	43.09
HORVU4Hr1G041690.2	Barley	cytosol, nucleus	56.91	41.74
CDY13800	Canola	cytosol	46.88	37.8
CDY22339	Canola	cytosol	39.14	32.16
CDX94717	Canola	cytosol	38.82	31.38
CDY59754	Canola	cytosol	47.37	30.41
Zm00001d004639_P001	Maize	plastid	18.91	27.71
CDY64015	Canola	cytosol	4.44	19.42
CDY22008	Canola	plastid	13.82	9.61
CDY07119	Canola	plastid	13.65	9.5

Protein Annotations

Gene3D:1.20.120.730	Gene3D:2.60.40.1670	MapMan:22.4.1.3.1	Gene3D:3.40.20.10	Gene3D:3.40.50.410	GO:A0A078FG69
UniProt:A0A078FG69	InterPro:ADF-H/Gelsolin-like_dom_sf	EnsemblPlants:CDY12241	ProteinID:CDY12241	ProteinID:CDY12241.1	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0006888
GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0030127	EnsemblPlantsGene:GSBRNA2T00061280001	InterPro:Gelsolin-like_dom
InterPro:Gelsolin-like_dom_sf	InterPro:IPR029006	InterPro:IPR036465	PFAM:PF00626	PFAM:PF04811	PFAM:PF04815
PANTHER:PTHR11141	PANTHER:PTHR11141:SF2	SUPFAM:SSF53300	SUPFAM:SSF81811	SUPFAM:SSF81995	SUPFAM:SSF82754
InterPro:Sec23	InterPro:Sec23/24_helical_dom	InterPro:Sec23/24_helical_dom_sf	InterPro:Sec23/24_trunk_dom	UniParc:UPI0004EE8E92	SEG:seg
InterPro:vWFA_dom_sf	:	:	:	:	:

Description

BnaC04g12710DBnaC04g12710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FG69]

Coordinates

chrLK032018:-:768731..772712

Molecular Weight (calculated)

68712.2 Da

IEP (calculated)

6.346

GRAVY (calculated)

-0.072

Length

608 amino acids

Sequence
(BLAST)

001: MDPEGIDGVR MTWNIWRRTK LESTNCVVPV VHEHHHLTLR SAPLPRVFLS SKPLRNQTNL PHELHAHHTT FEYTLPNRSD RPSGAAFLFV LDTCMIDEEF
101: GFARSSVKRA VGLLPDEALV GFVSFGTQVH VHELGFSDLA KFDLLTTELH QTVVPHIAKI GFSCVEYELI VSKDLIEPLR SHKDLDKGEA PFYEKAEKFY
201: HGLANQLVNQ GLVLDIFASV LDQVGVAKMK ATVEKTGRLV VISESFGHSV FKDSFKRVFE DVNNLSVFVS SSNILTLFTQ SFSVENFKST VQRIKMQGII
301: GPCPTVADIV IGEGNITEWK MCGLDKISYE VCSRISYPLC FLFRLPSLIM FANYWQWVDT AASTEELVPG FDQETAAVVM ARLASLKMET EVEFDAQRWL
401: DRSLTRLCSK FGDYRNNDPT SFSLNPNFSL FPQFMFNLRR SQFVQVFNNS PDETAYSRML LNRENISNAA VMIQPSLTTY SFNSIPQPAL LDVSSIASDR
501: ILLLDSYFSI VVFHGLTIAQ CRTLGYQNHP EHQAFTQLLQ EPQEDAQMIA HGRFPMPRLV ARFLLARLNP SASYNNASEM NTGSAAIFRD DASLEVFYQH
601: LQKLAVQS

Best Arabidopsis Sequence Match ( AT1G05520.1 )
(BLAST)

001: MSEMASMDPE GIDGVRMTWN VWPRTKVEAS KCVIPVAACI SPIRYHRDIP SVEYAPLRCR ICTAALNPFA RVDFLAKIWI CPICFQRNHF PPHYHVMSET
101: NVPCELYPQY TTVEYTLPNP SQPTGVGNFD QTGAVSGQPS PSVFVFVLDT CMIEEEFGYA KSALKQAIGL LPENALVGFV SFGTQAHVHE LGFSDLTKVY
201: VFRGDKEISK DQVLEQLGLG ASGRRNPVGG FPMGRDNSAN FGYSGVNRFL LPASDCEFTI DLLLEELQTD QWPVQAGRRQ SRCTGVAISV ATGLLGACFP
301: GTGARIVALI GGPCSEGPGT IVSKDLSEPL RSHKDLDKDA APFYKKAEKF YDALANQLVN QGHVLDLFAS ALDQVGVAEM KAAVERTGGL VVLSESFGHS
401: VFKDSFKRVF EDGEESLGLC FNGTLEICCS KDIKIQGIIG PCASLQKKGP SVADTVIGEG NTTQWKMCGL DKRTCLTVFF DLSSSDQSSA PGGVNNQLYL
501: QFMTSYQNSK GKTLQRVTTV TRQWVDTGLS TEELVQGFDQ ETAAVVVARL ASLKMETEEG FDATRWLDRN LIRLCSKFGD YRKDDPASFT LNPNFSLFPQ
601: FTFNLRRSQF VQVFNNSPDE TAYNRMLLNR ENISNAAVMI QPSLTTYSFN SLPQPALLDV ASIGADRILL LDSYISVVVF HGMTIAQWRN LGYQNQPEHQ
701: AFAQLLEAPQ EDAQMIIRDR FPVPRLVVCD QHGSQARFLL AKLNPSATYN NASEMNAGSD IIFTDDVSLQ VFFQHLQKLA VQS

Arabidopsis Description

At1g05520/T25N20_16 [Source:UniProtKB/TrEMBL;Acc:Q8H0S3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.