Factsheet for TraesCS4B01G163100.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G151400.1	Wheat	golgi	100.0	100.0
TraesCS4A01G151800.3	Wheat	cytosol, plastid	99.49	98.98
Os11t0433500-01	Rice	cytosol, plasma membrane	43.09	96.01
HORVU4Hr1G041690.2	Barley	cytosol, nucleus	96.42	90.95
OQU83385	Sorghum	cytosol, plastid	91.18	89.91
Zm00001d049155_P004	Maize	plastid	90.54	89.51
GSMUA_Achr10P...	Banana	cytosol, golgi, plastid	66.75	79.82
Zm00001d004639_P001	Maize	plastid	41.94	79.04
GSMUA_Achr1P25630_001	Banana	plastid	72.89	77.24
GSMUA_Achr8P33210_001	Banana	cytosol	71.87	76.67
GSMUA_Achr9P30270_001	Banana	plastid	69.05	76.6
VIT_05s0062g00130.t01	Wine grape	cytosol	72.38	73.41
CDX86574	Canola	cytosol	70.84	72.23
CDY15544	Canola	cytosol	70.72	72.1
Bra030613.1-P	Field mustard	cytosol	70.72	72.1
KRG97365	Soybean	cytosol, endoplasmic reticulum, nucleus	70.2	71.67
KRH31551	Soybean	endoplasmic reticulum	69.95	71.32
CDY12077	Canola	cytosol	67.14	71.23
CDX90271	Canola	cytosol	66.88	70.87
Bra010748.1-P	Field mustard	cytosol	66.88	70.87
Bra032766.1-P	Field mustard	cytosol	69.69	70.6
GSMUA_Achr11P...	Banana	cytosol	19.69	70.32
PGSC0003DMT400040714	Potato	cytosol	70.33	70.15
CDY12738	Canola	cytosol	65.98	70.11
Solyc05g053830.2.1	Tomato	cytosol, nucleus, plastid	70.08	69.9
PGSC0003DMT400080958	Potato	cytosol	67.65	69.24
AT4G14160.1	Thale cress	cytosol	68.41	69.21
AT1G05520.1	Thale cress	cytosol	69.05	68.97
Solyc09g092680.2.1	Tomato	cytosol	67.39	68.8
CDY01197	Canola	cytosol	66.5	68.24
AT3G23660.2	Thale cress	cytosol	68.8	68.02
TraesCS4B01G085800.1	Wheat	cytosol	61.0	62.52
Zm00001d004640_P001	Maize	cytosol, plastid	39.9	62.03
TraesCS5B01G239200.1	Wheat	cytosol	59.85	61.42
TraesCS6B01G307800.1	Wheat	cytosol	51.02	59.64
CDY12241	Canola	cytosol	44.37	57.07
TraesCS5B01G386700.1	Wheat	cytosol	41.69	43.35
CDY64015	Canola	cytosol	7.03	39.57
Bra021056.1-P	Field mustard	cytosol, nucleus, plastid	9.08	31.84
TraesCS3B01G222900.1	Wheat	plastid	16.62	15.37

Protein Annotations

Gene3D:1.20.120.730	Gene3D:2.30.30.380	Gene3D:2.60.40.1670	MapMan:22.4.1.3.1	Gene3D:3.40.20.10	Gene3D:3.40.50.410
InterPro:ADF-H/Gelsolin-like_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0006888	GO:GO:0008150	GO:GO:0008270
GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0030127	GO:GO:0090114	InterPro:Gelsolin-like_dom
InterPro:Gelsolin-like_dom_sf	InterPro:IPR029006	InterPro:IPR036465	PFAM:PF00626	PFAM:PF04810	PFAM:PF04811
PFAM:PF04815	PFAM:PF08033	PANTHER:PTHR11141	PANTHER:PTHR11141:SF2	SUPFAM:SSF53300	SUPFAM:SSF81811
SUPFAM:SSF81995	SUPFAM:SSF82754	SUPFAM:SSF82919	InterPro:Sec23	InterPro:Sec23/24_helical_dom	InterPro:Sec23/24_helical_dom_sf
InterPro:Sec23/24_trunk_dom	InterPro:Sec23_24_beta_S	InterPro:Sec23_C	EnsemblPlantsGene:TraesCS4B01G163100	EnsemblPlants:TraesCS4B01G163100.3	InterPro:Znf_Sec23_Sec24
InterPro:Znf_Sec23_Sec24_sf	TIGR:cd11287	SEG:seg	InterPro:vWFA_dom_sf	:	:

Description

No Description!

Coordinates

chr4B:-:330775209..330793055

Molecular Weight (calculated)

85823.7 Da

IEP (calculated)

5.814

GRAVY (calculated)

-0.036

Length

782 amino acids

Sequence
(BLAST)

001: MAADPSAAAA PADPDGPDAV RFTWNAWPRS KVEASRCVVP LAVAISPVRS PESLASPPLP YPPLRCKPPC SALLNPFARV DFAAKIWICP LCFSRNHFPP
101: HYAGISENNV PAELFTQCST VEYLVAGPPG SPAPLPPVFL FVIDTCVIEE ELEYVKLSMR KAVALLPEHA LVGLVTFGTQ VHLHELGFSE LSKIYVFRGS
201: KEISKEQILD QLGLSGGGRP GFPKMTQQPG VQQVNGMHPL VTTGVNRFLL PVSECECTLS TLLDELQPDQ WPVEAGNRAI RCTGVALNVA AGLLGACVPG
301: TGARIIALLG GPCTEGPGVI VSKDLSEPVR SHKDLDKDAA PHFQKAVKFY DGLAKQLVSQ GHVLDVFASA LDQVGLAEMK LAIERTGGLV VLSESFGHSV
401: FKDSFKRIFE GGEHSLGLSF NGTFEINCSK DIKVQGVIGP CTSLEKKGAL CADTIVGQGN TTAWKMCGLD RNTSLTVFFD VSPSERSGQP GHQNPDLYIQ
501: FVTSYQHPEG QMRIRATTVS RKWVDGSTNT EELVEGFDQE TAAVVLARYI SLKMEIEEEF DATRWLDRSL IRLCSRFGDY RKDDPSSFSL HSNFSLFPQF
601: MFNLRRSQFV QVFNNSPDET AYFRMLLNRE SITNSVAMIQ PSLISFSFDS PPSPVFLDVA SIAVDRILLL DAYFSVVIFH GMTIAQWRNM CYQNQPEHQQ
701: FAQLLQAPQE EAQVIINGRF PVPRLVVCDQ HGSQARFLLA KLNPSATYNS AHDVPPGSDI IFTDDVSFQV FCEHLQRLAV QS

Best Arabidopsis Sequence Match ( AT3G23660.1 )
(BLAST)

001: MAETANTDLE GIDGVRMTWN VWPHSKAEAS KCVIPLAACI SPIRRHADIP TLPYAPLRCR TCSAALNAYA QVDFTAKLWI CPFCYQRNHF PPHYHVISET
101: NLPGELYPQY TTVEYTLPPP VANGEGLVDP PVFVFVLDTC MIEEELDFAK SALKQAIGLL PENALVGFVS FGTQAHVHEL GFSEMSKVFV FKGDKEISKD
201: QILDQLGLGG SSRRGGSKGP QNGFPSSGLN RFLLPASECE FTLNSLLDEL QSDQWPVKPG HRSQRCTGVA LSVAAGLLGA CLPGTGARIV ALIGGPCTEG
301: PGTIVSKDLS DPVRSHKDLD KDAAPYYKKA VKFYDSIAKQ LVTQGHVLDL FASALDQVGV AEMKVAVERT GGLVVLSESF GHSVFKDSFK RVFEDGDQAL
401: GLCFNGTLEI CCSQDIKIQG AIGPCSSLEK KGASVADTVI GEGNTSAWRL CGLDKTTCLT IFFDISSSGS NTPGAANPQF YLQFLTSYQN PEGQTLLRVT
501: TVCRQWIDSA VSSEELVQGF DQETAAVVMA RLASLKMESE EGFDATRWLD RNLIRLCSKF GDYRKDDPAS FTLNPYFSLF PQFIFNLRRS QFVQVFNNSP
601: DETAYFCMLL NRENISNATV MIQPSLTTYS FNSPAEPALL DVASIAADRI LLLDAYFSVV VFHGMTIAQW RNMGYHHQPE HQAFAELLQA PQEDSQMIVR
701: ERFPVPRLVV CDQHGSQARF LLAKLNPSAT YNNANEMSTG SDVIFTDDVS LQVFFEHLQK LVVQS

Arabidopsis Description

Sec23/Sec24 protein transport family protein [Source:UniProtKB/TrEMBL;Acc:F4J462]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.