Factsheet for Bra021056.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64015	Canola	cytosol	42.6	68.35
Zm00001d004639_P001	Maize	plastid	25.56	13.73
Bra010748.1-P	Field mustard	cytosol	43.5	13.14
Bra032766.1-P	Field mustard	cytosol	44.84	12.95
GSMUA_Achr10P...	Banana	cytosol, golgi, plastid	28.25	9.63
GSMUA_Achr9P30270_001	Banana	plastid	29.15	9.22
Zm00001d049155_P004	Maize	plastid	32.29	9.1
TraesCS4B01G163100.3	Wheat	plastid	31.84	9.08
TraesCS4D01G151400.1	Wheat	golgi	31.84	9.08
TraesCS4A01G151800.3	Wheat	cytosol, plastid	31.84	9.03
OQU83385	Sorghum	cytosol, plastid	31.84	8.95
HORVU4Hr1G041690.2	Barley	cytosol, nucleus	32.29	8.69
GSMUA_Achr1P25630_001	Banana	plastid	28.7	8.67
Bra030613.1-P	Field mustard	cytosol	29.15	8.47
Bra031206.1-P	Field mustard	cytosol	24.22	7.19
Bra033691.1-P	Field mustard	cytosol	21.52	6.49
GSMUA_Achr8P33210_001	Banana	cytosol	19.28	5.87
GSMUA_Achr11P...	Banana	cytosol	4.04	4.11
Zm00001d004640_P001	Maize	cytosol, plastid	8.52	3.78
Os11t0433500-01	Rice	cytosol, plasma membrane	3.59	2.28
Bra036313.1-P	Field mustard	cytosol, plastid	8.52	2.14
Bra005626.1-P	Field mustard	cytosol	0.9	1.72

Protein Annotations

EnsemblPlants:Bra021056.1	EnsemblPlants:Bra021056.1-P	EnsemblPlantsGene:Bra021056	Gene3D:3.40.50.410	InterPro:IPR036465	InterPro:Sec23
InterPro:vWFA_dom_sf	PANTHER:PTHR11141	PANTHER:PTHR11141:SF2	SUPFAM:SSF53300	UniParc:UPI0002547093	UniProt:M4DX10
MapMan:35.2	:	:	:	:	:

Description

AT4G14160 (E=1e-027) | transport protein, putative

Coordinates

chrA08:+:10164506..10167328

Molecular Weight (calculated)

24910.8 Da

IEP (calculated)

9.222

GRAVY (calculated)

-0.442

Length

223 amino acids

Sequence
(BLAST)

001: MCRQNCCAKS SQEEEVISPP DENLLIYCKP VRLYNILRIR SLYNVNQLRE VVTDGEKSKA GKKRAKAPWA KPLSQYSQAH VHELGFSEMS KVFVFKGNKE
101: VSKNQVLDQL RLSSRRVPTS GFPKRAQNGF QSAAGVNRFL LHASDCEYTL DLEERVDNNN GRCPTFVDHQ VSTLLCLGAA GARSIVAQTC ALIFFHNSVA
201: TGGGWRNNRG CLIKCCDSRA PDR

Best Arabidopsis Sequence Match ( AT4G14160.3 )
(BLAST)

001: MAEMADKAKV EEMDWEGIDG VRMTWNLWPR TKVEASKCVI PLAASISPIR RHPLILDLPY APLDCKTCKA LLNAFARVDF AAMNWVCPFC YHRNHFPSHY
101: HSISEINLPG ELYPQYTTVE YTLPPDPSRV PPPPVFVFVL DTCMIEEELG YAKSALKQAI GLLPENALVG FVSFGTQAHV HELGFSEMSK VFVFKGNKEV
201: TKDQILDQLG LGSSSRRAPT SGFSKGAQNG FQSSGVDRFL LPASECEYTL DLLLDELQSD QWPVQPGHRP QRCTGVALSV AAGLLGACLP GTGARIVALV
301: GGPCTEGPGT IISKDLSDPV RSHKDLDKDA APYYKKAVKF YDSIAKQLVA QGHVLDLFAS ALDQVGVAEM KVAVESTGGL VVLSESFGHS VFKDSFKRMF
401: EDGEHSLGLC FNGTLEINCS KDIKIQGVIG PCSSLEKKGP NVADTVIGEG NTSAWKLCGL DKSTCLTVFF DLSSTGSTAP GALNQQLYLQ FITRYQNSEG
501: KSLARVTTLT RQWVDTAVST ENLVQGFDQE TAAVVMARLT SLKMETEEGF DATRWLDRTL IRLCSKFGEY RKDDPTSFTL KPYLTLFPQF MFNLRRSQFV
601: QDLRQLCWMW LPLQLTRFFY

Arabidopsis Description

Sec23/Sec24 protein transport family protein [Source:UniProtKB/TrEMBL;Acc:F4JUM1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.