Factsheet for Zm00001d004640_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 2
plastid 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0433500-01	Rice	cytosol, plasma membrane	45.92	65.81
GSMUA_Achr10P...	Banana	cytosol, golgi, plastid	55.47	42.66
OQU83385	Sorghum	cytosol, plastid	64.61	40.98
Zm00001d049155_P004	Maize	plastid	64.21	40.83
TraesCS4D01G151400.1	Wheat	golgi	62.03	39.9
TraesCS4B01G163100.3	Wheat	plastid	62.03	39.9
GSMUA_Achr9P30270_001	Banana	plastid	55.86	39.86
TraesCS4A01G151800.3	Wheat	cytosol, plastid	61.83	39.57
GSMUA_Achr1P25630_001	Banana	plastid	56.86	38.75
GSMUA_Achr8P33210_001	Banana	cytosol	55.27	37.93
HORVU4Hr1G041690.2	Barley	cytosol, nucleus	61.83	37.52
KRG97365	Soybean	cytosol, endoplasmic reticulum, nucleus	56.46	37.08
CDX90271	Canola	cytosol	54.27	36.99
Bra010748.1-P	Field mustard	cytosol	54.27	36.99
VIT_05s0062g00130.t01	Wine grape	cytosol	56.66	36.97
CDY12738	Canola	cytosol	54.08	36.96
CDY12077	Canola	cytosol	54.08	36.91
KRH31551	Soybean	endoplasmic reticulum	56.26	36.9
CDY12241	Canola	cytosol	43.94	36.35
CDY01197	Canola	cytosol	54.47	35.96
Bra032766.1-P	Field mustard	cytosol	55.07	35.88
PGSC0003DMT400040714	Potato	cytosol	55.67	35.71
Solyc05g053830.2.1	Tomato	cytosol, nucleus, plastid	55.47	35.59
PGSC0003DMT400080958	Potato	cytosol	53.88	35.47
Bra030613.1-P	Field mustard	cytosol	54.08	35.46
CDX86574	Canola	cytosol	54.08	35.46
CDY15544	Canola	cytosol	54.08	35.46
AT4G14160.1	Thale cress	cytosol	54.47	35.45
Solyc09g092680.2.1	Tomato	cytosol	53.68	35.25
AT1G05520.1	Thale cress	cytosol	53.28	34.23
AT3G23660.2	Thale cress	cytosol	53.28	33.88
Zm00001d005902_P001	Maize	cytosol	50.7	33.46
GSMUA_Achr11P...	Banana	cytosol	14.31	32.88
Zm00001d013301_P002	Maize	cytosol	37.77	25.23
Zm00001d033975_P002	Maize	cytosol	37.57	24.11
CDY64015	Canola	cytosol	2.98	10.79
Zm00001d004639_P001	Maize	plastid	7.55	9.16
Zm00001d009150_P002	Maize	plastid	15.71	9.12
Bra021056.1-P	Field mustard	cytosol, nucleus, plastid	3.78	8.52

Protein Annotations

Gene3D:1.20.120.730	MapMan:22.4.1.3.1	Gene3D:3.40.20.10	UniProt:A0A1D6EGL7	InterPro:ADF-H/Gelsolin-like_dom_sf	GO:GO:0000139
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810
GO:GO:0006886	GO:GO:0006888	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	GO:GO:0016020
GO:GO:0016043	GO:GO:0030127	GO:GO:0090114	InterPro:Gelsolin-like_dom	InterPro:Gelsolin-like_dom_sf	InterPro:IPR029006
ProteinID:ONM19311.1	PFAM:PF00626	PFAM:PF04811	PFAM:PF04815	PANTHER:PTHR11141	PANTHER:PTHR11141:SF2
SUPFAM:SSF81811	SUPFAM:SSF82754	InterPro:Sec23	InterPro:Sec23/24_helical_dom	InterPro:Sec23/24_helical_dom_sf	InterPro:Sec23/24_trunk_dom
InterPro:Sec23_C	UniParc:UPI00084409F7	EnsemblPlantsGene:Zm00001d004640	EnsemblPlants:Zm00001d004640_P001	EnsemblPlants:Zm00001d004640_T001	SEG:seg

Description

Sec23/Sec24 protein transport family protein

Coordinates

chr2:+:124660879..124683534

Molecular Weight (calculated)

56838.8 Da

IEP (calculated)

6.055

GRAVY (calculated)

-0.091

Length

503 amino acids

Sequence
(BLAST)

001: MVPSAPAVLV DLVASGGARP SQVPSTPREE FDATRWLDRS LIRLCSRFGD YRKDDPSSFS LHSNFSLFPQ FMFNLRRSQF VQVFNNSPDE TAYFRMLLNR
101: ESITNSVAMI QPSLISFSFD SPPSPVFLDV ASLAADRILL LDAYFSVVIF HGMTIAQWRN MGYQNQPEHE QFAQLLQAPH EDAQMIIKGR FPVPRLVVCD
201: QHGSQVGLAE MKVAIERTGG LVVLSESFGH SVFKDSFKRI FEGGEQSLGL SFNGTIEINY SKDIKVQGII GPCTSLEKEE FDATRWLDRS LIRLCSRFGD
301: YRKDDPSSFS LHSNFSLFPQ FMFNLRRSQF VQVFNNSPDE TAYFRMLLNR ESITNSVAMI QPSLISFSFD SPPSPVFLDV ASLAADRILL LDAYFSVVIF
401: HGMTIAQWRN MGYQNQPEHE QFAQLLQAPH EDAQMIIKGR FPVPRLVVCD QHGSQARFLL AKLNPSATYN SAHDVAPGSD IIFTDDVSFL VFCEHLQRLA
501: VQS

Best Arabidopsis Sequence Match ( AT1G05520.1 )
(BLAST)

001: MSEMASMDPE GIDGVRMTWN VWPRTKVEAS KCVIPVAACI SPIRYHRDIP SVEYAPLRCR ICTAALNPFA RVDFLAKIWI CPICFQRNHF PPHYHVMSET
101: NVPCELYPQY TTVEYTLPNP SQPTGVGNFD QTGAVSGQPS PSVFVFVLDT CMIEEEFGYA KSALKQAIGL LPENALVGFV SFGTQAHVHE LGFSDLTKVY
201: VFRGDKEISK DQVLEQLGLG ASGRRNPVGG FPMGRDNSAN FGYSGVNRFL LPASDCEFTI DLLLEELQTD QWPVQAGRRQ SRCTGVAISV ATGLLGACFP
301: GTGARIVALI GGPCSEGPGT IVSKDLSEPL RSHKDLDKDA APFYKKAEKF YDALANQLVN QGHVLDLFAS ALDQVGVAEM KAAVERTGGL VVLSESFGHS
401: VFKDSFKRVF EDGEESLGLC FNGTLEICCS KDIKIQGIIG PCASLQKKGP SVADTVIGEG NTTQWKMCGL DKRTCLTVFF DLSSSDQSSA PGGVNNQLYL
501: QFMTSYQNSK GKTLQRVTTV TRQWVDTGLS TEELVQGFDQ ETAAVVVARL ASLKMETEEG FDATRWLDRN LIRLCSKFGD YRKDDPASFT LNPNFSLFPQ
601: FTFNLRRSQF VQVFNNSPDE TAYNRMLLNR ENISNAAVMI QPSLTTYSFN SLPQPALLDV ASIGADRILL LDSYISVVVF HGMTIAQWRN LGYQNQPEHQ
701: AFAQLLEAPQ EDAQMIIRDR FPVPRLVVCD QHGSQARFLL AKLNPSATYN NASEMNAGSD IIFTDDVSLQ VFFQHLQKLA VQS

Arabidopsis Description

At1g05520/T25N20_16 [Source:UniProtKB/TrEMBL;Acc:Q8H0S3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.