CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
plastid 2
endoplasmic reticulum 2
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0433500-01	Rice	cytosol, plasma membrane	43.13	97.44
Zm00001d049155_P004	Maize	plastid	96.34	96.59
TraesCS4B01G163100.3	Wheat	plastid	89.91	91.18
TraesCS4D01G151400.1	Wheat	golgi	89.91	91.18
TraesCS4A01G151800.3	Wheat	cytosol, plastid	89.66	90.46
Zm00001d004639_P001	Maize	plastid	45.9	87.71
HORVU4Hr1G041690.2	Barley	cytosol, nucleus	89.03	85.16
GSMUA_Achr10P...	Banana	cytosol, golgi, plastid	67.47	81.8
GSMUA_Achr1P25630_001	Banana	plastid	73.52	79.0
GSMUA_Achr9P30270_001	Banana	plastid	69.23	77.87
GSMUA_Achr8P33210_001	Banana	cytosol	71.88	77.76
VIT_05s0062g00130.t01	Wine grape	cytosol	72.13	74.19
CDY12077	Canola	cytosol	67.97	73.13
KRG97365	Soybean	cytosol, endoplasmic reticulum, nucleus	70.62	73.11
CDY15544	Canola	cytosol	70.62	73.01
CDX86574	Canola	cytosol	70.62	73.01
Bra030613.1-P	Field mustard	cytosol	70.62	73.01
KRH31551	Soybean	endoplasmic reticulum	70.24	72.62
Bra032766.1-P	Field mustard	cytosol	70.49	72.41
Bra010748.1-P	Field mustard	cytosol	67.21	72.22
CDX90271	Canola	cytosol	67.21	72.22
CDY12738	Canola	cytosol	66.58	71.74
GSMUA_Achr11P...	Banana	cytosol	19.8	71.69
PGSC0003DMT400040714	Potato	cytosol	69.99	70.79
Solyc05g053830.2.1	Tomato	cytosol, nucleus, plastid	69.74	70.54
AT4G14160.1	Thale cress	cytosol	68.22	69.99
PGSC0003DMT400080958	Potato	cytosol	67.34	69.9
CDY01197	Canola	cytosol	67.09	69.82
AT1G05520.1	Thale cress	cytosol	68.85	69.73
Solyc09g092680.2.1	Tomato	cytosol	67.09	69.45
AT3G23660.2	Thale cress	cytosol	68.6	68.77
Zm00001d004640_P001	Maize	cytosol, plastid	40.98	64.61
OQU80636	Sorghum	cytosol	61.16	63.56
EER96867	Sorghum	cytosol	60.91	63.39
CDY12241	Canola	cytosol	43.63	56.91
EER99932	Sorghum	cytosol	21.56	47.24
EER93475	Sorghum	cytosol	42.62	44.89
CDY64015	Canola	cytosol	7.44	42.45
Bra021056.1-P	Field mustard	cytosol, nucleus, plastid	8.95	31.84
EES02883	Sorghum	cytosol, plastid	16.02	14.63

Protein Annotations

Gene3D:1.20.120.730	Gene3D:2.30.30.380	Gene3D:2.60.40.1670	MapMan:22.4.1.3.1	Gene3D:3.40.20.10	Gene3D:3.40.50.410
EntrezGene:8155678	InterPro:ADF-H/Gelsolin-like_dom_sf	UniProt:C6JRL5	ProteinID:EES20133.1	GO:GO:0000139	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0006810	GO:GO:0006886	GO:GO:0006888	GO:GO:0008150	GO:GO:0008270	GO:GO:0009987
GO:GO:0015031	GO:GO:0016020	GO:GO:0016043	GO:GO:0030127	GO:GO:0090114	InterPro:Gelsolin-like_dom
InterPro:Gelsolin-like_dom_sf	InterPro:IPR029006	InterPro:IPR036465	ProteinID:KXG19079.1	EnsemblPlants:OQU83385	ProteinID:OQU83385
ProteinID:OQU83385.1	PFAM:PF00626	PFAM:PF04810	PFAM:PF04811	PFAM:PF04815	PFAM:PF08033
PANTHER:PTHR11141	PANTHER:PTHR11141:SF2	EnsemblPlantsGene:SORBI_3005G110499	SUPFAM:SSF53300	SUPFAM:SSF81811	SUPFAM:SSF81995
SUPFAM:SSF82754	SUPFAM:SSF82919	InterPro:Sec23	InterPro:Sec23/24_helical_dom	InterPro:Sec23/24_helical_dom_sf	InterPro:Sec23/24_trunk_dom
InterPro:Sec23_24_beta_S	InterPro:Sec23_C	UniParc:UPI0001AFF6A1	RefSeq:XP_002489340.1	InterPro:Znf_Sec23_Sec24	InterPro:Znf_Sec23_Sec24_sf
SEG:seg	InterPro:vWFA_dom_sf	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:33183891..33192725

Molecular Weight (calculated)

86471.7 Da

IEP (calculated)

5.997

GRAVY (calculated)

-0.017

Length

793 amino acids

Sequence
(BLAST)

001: MSAADPSAAP VAAAVADPDG PDAVRLTWNT WPRSKVEASR CVVPLAATIS PARVPDPSAA SPPPLPYPPL RCKPPCSALL NPFARVDFAA KIWICPLCFS
101: RNHFPPHYAA ISESNVPAEL FPQCSTVEYI VGGAGVPGVG SAPAPPPPVF LFVIDTCVIE EELEYVKMAM RKAVALLPEH ALVGLVTFGT QVHLHELGFS
201: DLSKIYVFRG TKEISKDQIL DQLGLAGAGR PGFPKMPQQP GGPQVNGMHS LSTAGVNRFL LPVSECECAL STLLDELQPD QWPVEAGNRA IRCTGVALSV
301: AAGLLGACMP GTGARIIALL GGPCTEGPGM IVSKELSEPV RSHKDLDKDA APHFQKAIKF YDGLAKQLVS QGHVLDVFAS ALDQVGLAEM KVAIERTGGL
401: VVLSESFGHS VFKDSFKRIF EGGEQSLGLS FNGTIEINCS KDIKVQGIIG PCTSLEKKGA VCADTVVGQG NTAAWKMCGL DRNTSLTVFF DVSPSERSSQ
501: PGHQNPHLYI QFVTSYQHPE GQMRIRVTTI CRKWVDGSTN TEELVEGFDQ ETAAVVLARY ISLKMEMEEE FDATRWLDRS LIRLCSRFGD YRKDDPSSFS
601: LHSNFSLFPQ FMFNLRRSQF VQVFNNSPDE TAYFRMLLNR ESITNSVAMI QPSLISFSFD SPPSPVFLDV ASIAADRILL LDAYFSVVIF HGMTIAQWRN
701: MGYQNQPEHE QFAQLLQAPH EDAQMIIKGR FPVPRLVVCD QHGSQARFLL AKLNPSATYN SAHDVAPGSD IIFTDDVSFQ VFCEHLQRLA VQS

Best Arabidopsis Sequence Match ( AT3G23660.1 )
(BLAST)

001: MAETANTDLE GIDGVRMTWN VWPHSKAEAS KCVIPLAACI SPIRRHADIP TLPYAPLRCR TCSAALNAYA QVDFTAKLWI CPFCYQRNHF PPHYHVISET
101: NLPGELYPQY TTVEYTLPPP VANGEGLVDP PVFVFVLDTC MIEEELDFAK SALKQAIGLL PENALVGFVS FGTQAHVHEL GFSEMSKVFV FKGDKEISKD
201: QILDQLGLGG SSRRGGSKGP QNGFPSSGLN RFLLPASECE FTLNSLLDEL QSDQWPVKPG HRSQRCTGVA LSVAAGLLGA CLPGTGARIV ALIGGPCTEG
301: PGTIVSKDLS DPVRSHKDLD KDAAPYYKKA VKFYDSIAKQ LVTQGHVLDL FASALDQVGV AEMKVAVERT GGLVVLSESF GHSVFKDSFK RVFEDGDQAL
401: GLCFNGTLEI CCSQDIKIQG AIGPCSSLEK KGASVADTVI GEGNTSAWRL CGLDKTTCLT IFFDISSSGS NTPGAANPQF YLQFLTSYQN PEGQTLLRVT
501: TVCRQWIDSA VSSEELVQGF DQETAAVVMA RLASLKMESE EGFDATRWLD RNLIRLCSKF GDYRKDDPAS FTLNPYFSLF PQFIFNLRRS QFVQVFNNSP
601: DETAYFCMLL NRENISNATV MIQPSLTTYS FNSPAEPALL DVASIAADRI LLLDAYFSVV VFHGMTIAQW RNMGYHHQPE HQAFAELLQA PQEDSQMIVR
701: ERFPVPRLVV CDQHGSQARF LLAKLNPSAT YNNANEMSTG SDVIFTDDVS LQVFFEHLQK LVVQS

Arabidopsis Description

Sec23/Sec24 protein transport family protein [Source:UniProtKB/TrEMBL;Acc:F4J462]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.