Factsheet for Zm00001d049155_P004

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 1
endoplasmic reticulum 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plasma membrane, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	endoplasmic reticulum
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0433500-01	Rice	cytosol, plasma membrane	43.11	97.15
OQU83385	Sorghum	cytosol, plastid	96.59	96.34
TraesCS4B01G163100.3	Wheat	plastid	89.51	90.54
TraesCS4D01G151400.1	Wheat	golgi	89.51	90.54
TraesCS4A01G151800.3	Wheat	cytosol, plastid	89.25	89.82
Zm00001d004639_P001	Maize	plastid	44.75	85.3
HORVU4Hr1G041690.2	Barley	cytosol, nucleus	88.62	84.56
GSMUA_Achr10P...	Banana	cytosol, golgi, plastid	67.51	81.65
GSMUA_Achr1P25630_001	Banana	plastid	73.45	78.73
GSMUA_Achr9P30270_001	Banana	plastid	69.41	77.87
GSMUA_Achr8P33210_001	Banana	cytosol	71.81	77.49
VIT_05s0062g00130.t01	Wine grape	cytosol	72.31	74.19
CDY12077	Canola	cytosol	68.14	73.13
KRG97365	Soybean	cytosol, endoplasmic reticulum, nucleus	70.54	72.85
Bra030613.1-P	Field mustard	cytosol	70.42	72.62
CDY15544	Canola	cytosol	70.42	72.62
CDX86574	Canola	cytosol	70.42	72.62
KRH31551	Soybean	endoplasmic reticulum	70.42	72.62
Bra032766.1-P	Field mustard	cytosol	70.54	72.28
CDX90271	Canola	cytosol	67.38	72.22
Bra010748.1-P	Field mustard	cytosol	67.38	72.22
CDY12738	Canola	cytosol	66.62	71.6
PGSC0003DMT400040714	Potato	cytosol	70.54	71.17
Solyc05g053830.2.1	Tomato	cytosol, nucleus, plastid	70.29	70.92
GSMUA_Achr11P...	Banana	cytosol	19.6	70.78
PGSC0003DMT400080958	Potato	cytosol	67.89	70.29
AT4G14160.1	Thale cress	cytosol	68.14	69.73
Solyc09g092680.2.1	Tomato	cytosol	67.51	69.71
CDY01197	Canola	cytosol	67.13	69.69
AT1G05520.1	Thale cress	cytosol	68.9	69.6
AT3G23660.2	Thale cress	cytosol	68.52	68.52
Zm00001d004640_P001	Maize	cytosol, plastid	40.83	64.21
Zm00001d005902_P001	Maize	cytosol	61.69	64.04
CDY12241	Canola	cytosol	43.36	56.41
Zm00001d013301_P002	Maize	cytosol	42.73	44.89
CDY64015	Canola	cytosol	7.59	43.17
Zm00001d033975_P002	Maize	cytosol	42.23	42.6
Bra021056.1-P	Field mustard	cytosol, nucleus, plastid	9.1	32.29
Zm00001d009150_P002	Maize	plastid	16.06	14.67

Protein Annotations

Gene3D:1.20.120.730	EntrezGene:103652905	Gene3D:2.30.30.380	Gene3D:2.60.40.1670	MapMan:22.4.1.3.1	Gene3D:3.40.20.10
Gene3D:3.40.50.410	InterPro:ADF-H/Gelsolin-like_dom_sf	ProteinID:AQK49707.1	ProteinID:AQK49716.1	GO:GO:0000139	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0006810	GO:GO:0006886	GO:GO:0006888	GO:GO:0008150	GO:GO:0008270	GO:GO:0009987
GO:GO:0015031	GO:GO:0016020	GO:GO:0016043	GO:GO:0030127	GO:GO:0090114	InterPro:Gelsolin-like_dom
InterPro:Gelsolin-like_dom_sf	InterPro:IPR029006	InterPro:IPR036465	UniProt:K7UQK1	PFAM:PF00626	PFAM:PF04810
PFAM:PF04811	PFAM:PF04815	PFAM:PF08033	PANTHER:PTHR11141	PANTHER:PTHR11141:SF2	SUPFAM:SSF53300
SUPFAM:SSF81811	SUPFAM:SSF81995	SUPFAM:SSF82754	SUPFAM:SSF82919	InterPro:Sec23	InterPro:Sec23/24_helical_dom
InterPro:Sec23/24_helical_dom_sf	InterPro:Sec23/24_trunk_dom	InterPro:Sec23_24_beta_S	InterPro:Sec23_C	UniParc:UPI00022132A3	EnsemblPlantsGene:Zm00001d049155
EnsemblPlants:Zm00001d049155_P004	EnsemblPlants:Zm00001d049155_T004	InterPro:Znf_Sec23_Sec24	InterPro:Znf_Sec23_Sec24_sf	SEG:seg	InterPro:vWFA_dom_sf

Description

Sec23/Sec24 protein transport family protein

Coordinates

chr4:+:18226608..18236254

Molecular Weight (calculated)

86344.5 Da

IEP (calculated)

5.918

GRAVY (calculated)

-0.046

Length

791 amino acids

Sequence
(BLAST)

001: MSAADPSAAP AAAADPDGPD SVRLTWNTWP RSKVEASRCV VPLAATISPT RVPDPSAASP PPLPYPPLRC KPPCSALLNP FARVDFAAKI WICPLCFSRN
101: HFPPHYAAIS ESNVPAELFP QCSTVDYIVG GAGIPGVGGA PPPPPPVFLF VIDTCVIEEE LEYVKMAMRK AVALLPEHAL VGLVTFGTQV HLHELGFSDL
201: SKIYVFRGTK EISKDQILDQ LGLAGAGRPG FPKMPQQPGG PQVNGMHPPS TAGVNRFLLP VSDCEIALST LLDELQPDQW PVEAGNRAIR CTGVALSVAA
301: GLLGACMPGT GARIIALLGG PCTEGPGMIV SKDLSEPVRS HKDLDKDAAP HFQKAVKFYD GLAKQLVSQG HVLDVFASAL DQVGLAEMKV AIERTGGLVV
401: LSESFGHSVF KDSFKRIFEG GEQSLGLSFN GIIEINCSKD IKVQGIIGPC TSLEKKGAMC SDTVVGQGNT SAWKMCGLDR NTSLTVFFDV SPSERSSQPG
501: NQNPHLYIQF VTSYQHPEGQ MRIRVTTICR KWVDGSTNTE ELVEGFDQET AAVVLARYIS LKMEMEEEFD ATRWLDRSLI RLCSRFGDYR KDDPSSFSLH
601: SNFSLFPQFM FNLRRSQFVQ VFNNSPDETA YFRMLLNRES ITNSVAMIQP SLISFSFDSP PSPVFLDVAS IAADRILLLD AYFSVVIFHG MTIAQWRNMG
701: YQNQPEHEQF AQLLQAPHEE AQMIIKGRFP VPRLVVCDQH GSQARFLLAK LNPSATYNSA HDVAPGSDII FTDDVSFQVF CEHLQRLAVQ S

Best Arabidopsis Sequence Match ( AT3G23660.1 )
(BLAST)

001: MAETANTDLE GIDGVRMTWN VWPHSKAEAS KCVIPLAACI SPIRRHADIP TLPYAPLRCR TCSAALNAYA QVDFTAKLWI CPFCYQRNHF PPHYHVISET
101: NLPGELYPQY TTVEYTLPPP VANGEGLVDP PVFVFVLDTC MIEEELDFAK SALKQAIGLL PENALVGFVS FGTQAHVHEL GFSEMSKVFV FKGDKEISKD
201: QILDQLGLGG SSRRGGSKGP QNGFPSSGLN RFLLPASECE FTLNSLLDEL QSDQWPVKPG HRSQRCTGVA LSVAAGLLGA CLPGTGARIV ALIGGPCTEG
301: PGTIVSKDLS DPVRSHKDLD KDAAPYYKKA VKFYDSIAKQ LVTQGHVLDL FASALDQVGV AEMKVAVERT GGLVVLSESF GHSVFKDSFK RVFEDGDQAL
401: GLCFNGTLEI CCSQDIKIQG AIGPCSSLEK KGASVADTVI GEGNTSAWRL CGLDKTTCLT IFFDISSSGS NTPGAANPQF YLQFLTSYQN PEGQTLLRVT
501: TVCRQWIDSA VSSEELVQGF DQETAAVVMA RLASLKMESE EGFDATRWLD RNLIRLCSKF GDYRKDDPAS FTLNPYFSLF PQFIFNLRRS QFVQVFNNSP
601: DETAYFCMLL NRENISNATV MIQPSLTTYS FNSPAEPALL DVASIAADRI LLLDAYFSVV VFHGMTIAQW RNMGYHHQPE HQAFAELLQA PQEDSQMIVR
701: ERFPVPRLVV CDQHGSQARF LLAKLNPSAT YNNANEMSTG SDVIFTDDVS LQVFFEHLQK LVVQS

Arabidopsis Description

Sec23/Sec24 protein transport family protein [Source:UniProtKB/TrEMBL;Acc:F4J462]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.