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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 1
  • endoplasmic reticulum 1
  • cytosol 3
  • plasma membrane 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, endoplasmic reticulum, mitochondrion, nucleus, plasma membrane
BaCelLo:nucleus
EpiLoc:endoplasmic reticulum
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRG97365 Soybean cytosol, endoplasmic reticulum, nucleus 96.48 96.61
VIT_05s0062g00130.t01 Wine grape cytosol 83.18 82.75
Bra030613.1-P Field mustard cytosol 79.01 79.01
CDX86574 Canola cytosol 79.01 79.01
CDY15544 Canola cytosol 79.01 79.01
Bra032766.1-P Field mustard cytosol 79.14 78.63
PGSC0003DMT400080958 Potato cytosol 77.84 78.14
CDY12738 Canola cytosol 74.97 78.12
PGSC0003DMT400040714 Potato cytosol 79.66 77.93
CDX90271 Canola cytosol 74.97 77.91
CDY12077 Canola cytosol 74.84 77.88
Os11t0433500-01 Rice cytosol, plasma membrane 35.59 77.78
Solyc05g053830.2.1 Tomato cytosol, nucleus, plastid 79.4 77.68
GSMUA_Achr10P... Banana cytosol, golgi, plastid 66.23 77.68
Bra010748.1-P Field mustard cytosol 74.71 77.64
Solyc09g092680.2.1 Tomato cytosol 77.44 77.55
AT1G05520.1 Thale cress cytosol 79.01 77.39
AT4G14160.1 Thale cress cytosol 77.31 76.71
AT3G23660.2 Thale cress cytosol 78.62 76.23
CDY01197 Canola cytosol 74.97 75.46
GSMUA_Achr9P30270_001 Banana plastid 67.93 73.9
GSMUA_Achr8P33210_001 Banana cytosol 70.4 73.67
GSMUA_Achr1P25630_001 Banana plastid 70.01 72.76
Zm00001d049155_P004 Maize plastid 72.62 70.42
OQU83385 Sorghum cytosol, plastid 72.62 70.24
TraesCS4B01G163100.3 Wheat plastid 71.32 69.95
TraesCS4D01G151400.1 Wheat golgi 71.32 69.95
TraesCS4A01G151800.3 Wheat cytosol, plastid 71.32 69.59
GSMUA_Achr11P... Banana cytosol 19.3 67.58
HORVU4Hr1G041690.2 Barley cytosol, nucleus 71.45 66.1
KRH66226 Soybean cytosol, endoplasmic reticulum 63.36 63.36
KRH07342 Soybean cytosol 62.84 63.01
CDY12241 Canola cytosol 49.67 62.66
Zm00001d004639_P001 Maize plastid 31.42 58.07
Zm00001d004640_P001 Maize cytosol, plastid 36.9 56.26
KRG97332 Soybean cytosol 41.85 43.97
KRG96600 Soybean nucleus 16.04 14.12
KRH68337 Soybean nucleus 15.91 14.01
Protein Annotations
Gene3D:1.20.120.730EntrezGene:100789860Gene3D:2.30.30.380Gene3D:2.60.40.1670MapMan:22.4.1.3.1Gene3D:3.40.20.10
Gene3D:3.40.50.410EMBL:ACUP02007146InterPro:ADF-H/Gelsolin-like_dom_sfEnsemblPlantsGene:GLYMA_11G253500GO:GO:0000139GO:GO:0003674
GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005794
GO:GO:0006810GO:GO:0006886GO:GO:0006888GO:GO:0008150GO:GO:0008270GO:GO:0009987
GO:GO:0015031GO:GO:0016020GO:GO:0016043GO:GO:0030127GO:GO:0090114InterPro:Gelsolin-like_dom
InterPro:Gelsolin-like_dom_sfUniProt:I1LN41InterPro:IPR029006InterPro:IPR036465EnsemblPlants:KRH31551ProteinID:KRH31551
ProteinID:KRH31551.1PFAM:PF00626PFAM:PF04810PFAM:PF04811PFAM:PF04815PFAM:PF08033
PANTHER:PTHR11141PANTHER:PTHR11141:SF2SUPFAM:SSF53300SUPFAM:SSF81811SUPFAM:SSF81995SUPFAM:SSF82754
SUPFAM:SSF82919InterPro:Sec23InterPro:Sec23/24_helical_domInterPro:Sec23/24_helical_dom_sfInterPro:Sec23/24_trunk_domInterPro:Sec23_24_beta_S
InterPro:Sec23_CUniParc:UPI000233D6F1InterPro:Znf_Sec23_Sec24InterPro:Znf_Sec23_Sec24_sfSEG:segInterPro:vWFA_dom_sf
Description
hypothetical protein
Coordinates
chr11:+:34419585..34426107
Molecular Weight (calculated)
84589.2 Da
IEP (calculated)
6.244
GRAVY (calculated)
-0.050
Length
767 amino acids
Sequence
(BLAST)
001: MSEMASPDPE GLDGVRMTWN VWPRTKVESS KCVIPLAATV ALIRPHPDIP RLQYAPLRCK TCSSALNPFS RVDFTAKIWI CPFCYQRNHF PPHYHAISET
101: NFPGELYPQY TTVEYLLPLS NSLNPSPVFL FLLDTCLIDE EIHFLKSALR RAIGLLPDNA LVGFVSFGTQ VQVYELGFSD MSKVYVFRGS KEIPAEQILD
201: QLGLSASGRR PHKGAAPGVA GAGGFPNSGI TRFLLPASEC EYTLNALLDE LQTDQWPVPP GRRPARCTGV ALSVAAGLLS ACNPGTGARI IALVGGPCTE
301: GPGAIVSKDL SDPVRSHKDL DKDAAPFFKK AVKFYEGLAK QLVSQGHVLD IFASALDQVG VAEIKVAVER TGGLVVLSES FGHSVFKDSF KRVFEDGEQS
401: LGLCFNGTLE INCSKEIKIQ GIIGPCTSLE KKGPSVSDTV IGEGNTTAWK MCGLDKSTCL TVMFDLSSSD RSNTPGAINP QLYLQFLTSY QDPSGQSVLR
501: VTTVTRRWVD SSVSSEELVQ GFDQETAAVV MARFASLKME SEETFDATRW LDRFLIRLCS KFGDYRKDDP SSFTLNPSFS LFPQFMFNLR RSQFVQVFNN
601: SPDETAYFRM LLNRENISNA AVMIQPSLIS YSFNALPAPA LLDVASIAAD KILLLDSYFS VVIFHGMTIA QWRNLGYQNQ QEHQAFAQLL RAPHDDAQMI
701: IRERFPVPRL VVCDQHGSQA RFLLAKLNPS ATYNNAHEMA AGSDVIFTDD VSLQVFFEHL QRLAVQS
Best Arabidopsis Sequence Match ( AT1G05520.1 )
(BLAST)
001: MSEMASMDPE GIDGVRMTWN VWPRTKVEAS KCVIPVAACI SPIRYHRDIP SVEYAPLRCR ICTAALNPFA RVDFLAKIWI CPICFQRNHF PPHYHVMSET
101: NVPCELYPQY TTVEYTLPNP SQPTGVGNFD QTGAVSGQPS PSVFVFVLDT CMIEEEFGYA KSALKQAIGL LPENALVGFV SFGTQAHVHE LGFSDLTKVY
201: VFRGDKEISK DQVLEQLGLG ASGRRNPVGG FPMGRDNSAN FGYSGVNRFL LPASDCEFTI DLLLEELQTD QWPVQAGRRQ SRCTGVAISV ATGLLGACFP
301: GTGARIVALI GGPCSEGPGT IVSKDLSEPL RSHKDLDKDA APFYKKAEKF YDALANQLVN QGHVLDLFAS ALDQVGVAEM KAAVERTGGL VVLSESFGHS
401: VFKDSFKRVF EDGEESLGLC FNGTLEICCS KDIKIQGIIG PCASLQKKGP SVADTVIGEG NTTQWKMCGL DKRTCLTVFF DLSSSDQSSA PGGVNNQLYL
501: QFMTSYQNSK GKTLQRVTTV TRQWVDTGLS TEELVQGFDQ ETAAVVVARL ASLKMETEEG FDATRWLDRN LIRLCSKFGD YRKDDPASFT LNPNFSLFPQ
601: FTFNLRRSQF VQVFNNSPDE TAYNRMLLNR ENISNAAVMI QPSLTTYSFN SLPQPALLDV ASIGADRILL LDSYISVVVF HGMTIAQWRN LGYQNQPEHQ
701: AFAQLLEAPQ EDAQMIIRDR FPVPRLVVCD QHGSQARFLL AKLNPSATYN NASEMNAGSD IIFTDDVSLQ VFFQHLQKLA VQS
Arabidopsis Description
At1g05520/T25N20_16 [Source:UniProtKB/TrEMBL;Acc:Q8H0S3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.