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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra032766.1-P Field mustard cytosol 87.06 87.18
CDX90271 Canola cytosol 81.89 85.77
CDY12077 Canola cytosol 81.5 85.48
CDY12738 Canola cytosol 81.37 85.46
Bra010748.1-P Field mustard cytosol 81.5 85.37
CDY01197 Canola cytosol 81.37 82.55
AT3G23660.2 Thale cress cytosol 82.15 80.28
VIT_05s0062g00130.t01 Wine grape cytosol 79.3 79.51
KRG97365 Soybean cytosol, endoplasmic reticulum, nucleus 77.62 78.33
AT1G05520.1 Thale cress cytosol 79.17 78.16
KRH31551 Soybean endoplasmic reticulum 76.71 77.31
GSMUA_Achr10P... Banana cytosol, golgi, plastid 62.1 73.39
PGSC0003DMT400040714 Potato cytosol 74.13 73.09
Solyc05g053830.2.1 Tomato cytosol, nucleus, plastid 73.87 72.83
PGSC0003DMT400080958 Potato cytosol 71.28 72.12
Os11t0433500-01 Rice cytosol, plasma membrane 32.73 72.08
Solyc09g092680.2.1 Tomato cytosol 71.15 71.8
GSMUA_Achr9P30270_001 Banana plastid 64.81 71.06
GSMUA_Achr8P33210_001 Banana cytosol 66.11 69.71
GSMUA_Achr1P25630_001 Banana plastid 66.36 69.51
TraesCS4B01G163100.3 Wheat plastid 69.21 68.41
TraesCS4D01G151400.1 Wheat golgi 69.21 68.41
OQU83385 Sorghum cytosol, plastid 69.99 68.22
Zm00001d049155_P004 Maize plastid 69.73 68.14
TraesCS4A01G151800.3 Wheat cytosol, plastid 69.21 68.07
GSMUA_Achr11P... Banana cytosol 18.37 64.84
HORVU4Hr1G041690.2 Barley cytosol, nucleus 69.21 64.54
Zm00001d004639_P001 Maize plastid 31.57 58.8
AT2G21630.1 Thale cress cytosol 54.98 55.85
Zm00001d004640_P001 Maize cytosol, plastid 35.45 54.47
AT5G43670.1 Thale cress cytosol 44.37 43.2
AT4G01810.2 Thale cress plastid 15.39 13.52
Protein Annotations
Gene3D:1.20.120.730Gene3D:2.30.30.380Gene3D:2.60.40.1670MapMan:22.4.1.3.1Gene3D:3.40.20.10Gene3D:3.40.50.410
EntrezGene:827055InterPro:ADF-H/Gelsolin-like_dom_sfProteinID:AEE83385.1ArrayExpress:AT4G14160EnsemblPlantsGene:AT4G14160RefSeq:AT4G14160
TAIR:AT4G14160RefSeq:AT4G14160-TAIR-GEnsemblPlants:AT4G14160.1TAIR:AT4G14160.1Unigene:At.24579UniProt:F4JUM1
GO:GO:0000139GO:GO:0003674GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005794GO:GO:0005829GO:GO:0006810GO:GO:0006886GO:GO:0006888
GO:GO:0008150GO:GO:0008270GO:GO:0009987GO:GO:0015031GO:GO:0016020GO:GO:0016043
GO:GO:0030127GO:GO:0090114InterPro:Gelsolin-like_domInterPro:Gelsolin-like_dom_sfInterPro:IPR029006InterPro:IPR036465
RefSeq:NP_849541.2PFAM:PF00626PFAM:PF04810PFAM:PF04811PFAM:PF04815PFAM:PF08033
PO:PO:0000013PO:PO:0000037PO:PO:0000084PO:PO:0000230PO:PO:0000293PO:PO:0001054
PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095
PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616
PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025
PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047
PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022
PO:PO:0025281PANTHER:PTHR11141PANTHER:PTHR11141:SF2SUPFAM:SSF53300SUPFAM:SSF81811SUPFAM:SSF81995
SUPFAM:SSF82754SUPFAM:SSF82919InterPro:Sec23InterPro:Sec23/24_helical_domInterPro:Sec23/24_helical_dom_sfInterPro:Sec23/24_trunk_dom
InterPro:Sec23_24_beta_SInterPro:Sec23_CUniParc:UPI00015058A6InterPro:Znf_Sec23_Sec24InterPro:Znf_Sec23_Sec24_sfSEG:seg
InterPro:vWFA_dom_sf:::::
Description
Sec23/Sec24 protein transport family protein [Source:UniProtKB/TrEMBL;Acc:F4JUM1]
Coordinates
chr4:+:8167465..8173365
Molecular Weight (calculated)
85382.1 Da
IEP (calculated)
5.837
GRAVY (calculated)
-0.093
Length
773 amino acids
Sequence
(BLAST)
001: MAEMADKAKV EEMDWEGIDG VRMTWNLWPR TKVEASKCVI PLAASISPIR RHPLILDLPY APLDCKTCKA LLNAFARVDF AAMNWVCPFC YHRNHFPSHY
101: HSISEINLPG ELYPQYTTVE YTLPPDPSRV PPPPVFVFVL DTCMIEEELG YAKSALKQAI GLLPENALVG FVSFGTQAHV HELGFSEMSK VFVFKGNKEV
201: TKDQILDQLG LGSSSRRAPT SGFSKGAQNG FQSSGVDRFL LPASECEYTL DLLLDELQSD QWPVQPGHRP QRCTGVALSV AAGLLGACLP GTGARIVALV
301: GGPCTEGPGT IISKDLSDPV RSHKDLDKDA APYYKKAVKF YDSIAKQLVA QGHVLDLFAS ALDQVGVAEM KVAVESTGGL VVLSESFGHS VFKDSFKRMF
401: EDGEHSLGLC FNGTLEINCS KDIKIQGVIG PCSSLEKKGP NVADTVIGEG NTSAWKLCGL DKSTCLTVFF DLSSTGSTAP GALNQQLYLQ FITRYQNSEG
501: KSLARVTTLT RQWVDTAVST EVNLVQGFDQ ETAAVVMARL TSLKMETEEG FDATRWLDRT LIRLCSKFGE YRKDDPTSFT LKPYLTLFPQ FMFNLRRSQF
601: VQVFNNSPDE TAYFRMLLNR ENISNAIVMI QPSLTSYSFN SGPQAALLDV ASIAADKILL LDAYFSVVVF HGMTISQWRN MGYHHQPEHE AFAQLLQAPQ
701: EDSQMLVRER FPVPRLVVCD QHGSQARFLL AKLNPSATYN NANEMSAGSD IIFTDDVSLQ VFIEHLQKLA VQS
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.