Factsheet for Zm00001d004639_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 1
endoplasmic reticulum 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plasma membrane, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	endoplasmic reticulum
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU83385	Sorghum	cytosol, plastid	87.71	45.9
Zm00001d049155_P004	Maize	plastid	85.3	44.75
TraesCS4D01G151400.1	Wheat	golgi	79.04	41.94
TraesCS4B01G163100.3	Wheat	plastid	79.04	41.94
TraesCS4A01G151800.3	Wheat	cytosol, plastid	79.04	41.73
HORVU4Hr1G041690.2	Barley	cytosol, nucleus	77.83	38.96
CDY64015	Canola	cytosol	11.57	34.53
GSMUA_Achr1P25630_001	Banana	plastid	58.55	32.93
VIT_05s0062g00130.t01	Wine grape	cytosol	60.72	32.68
Bra030613.1-P	Field mustard	cytosol	59.52	32.2
CDX86574	Canola	cytosol	59.52	32.2
CDY15544	Canola	cytosol	59.52	32.2
GSMUA_Achr8P33210_001	Banana	cytosol	56.39	31.92
Bra032766.1-P	Field mustard	cytosol	59.04	31.74
AT4G14160.1	Thale cress	cytosol	58.8	31.57
KRG97365	Soybean	cytosol, endoplasmic reticulum, nucleus	58.07	31.46
KRH31551	Soybean	endoplasmic reticulum	58.07	31.42
AT1G05520.1	Thale cress	cytosol	58.55	31.03
AT3G23660.2	Thale cress	cytosol	59.04	30.97
PGSC0003DMT400040714	Potato	cytosol	58.07	30.74
Solyc05g053830.2.1	Tomato	cytosol, nucleus, plastid	57.83	30.61
CDY12077	Canola	cytosol	54.22	30.53
PGSC0003DMT400080958	Potato	cytosol	55.66	30.24
Solyc09g092680.2.1	Tomato	cytosol	55.66	30.16
Bra010748.1-P	Field mustard	cytosol	53.25	29.95
CDX90271	Canola	cytosol	53.25	29.95
GSMUA_Achr9P30270_001	Banana	plastid	50.6	29.79
CDY12738	Canola	cytosol	52.77	29.76
GSMUA_Achr10P...	Banana	cytosol, golgi, plastid	46.75	29.66
CDY01197	Canola	cytosol	53.01	28.87
Zm00001d005902_P001	Maize	cytosol	50.6	27.56
Bra021056.1-P	Field mustard	cytosol, nucleus, plastid	13.73	25.56
CDY12241	Canola	cytosol	27.71	18.91
Zm00001d013301_P002	Maize	cytosol	33.98	18.73
Zm00001d033975_P002	Maize	cytosol	33.73	17.86
GSMUA_Achr11P...	Banana	cytosol	4.82	9.13
Zm00001d004640_P001	Maize	cytosol, plastid	9.16	7.55
Zm00001d009150_P002	Maize	plastid	13.25	6.35
Os11t0433500-01	Rice	cytosol, plasma membrane	2.17	2.56

Protein Annotations

Gene3D:2.30.30.380	MapMan:22.4.1.3.1	Gene3D:3.40.50.410	UniProt:A0A1D6EGL6	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886
GO:GO:0006888	GO:GO:0008150	GO:GO:0008270	GO:GO:0016020	GO:GO:0030127	InterPro:IPR036465
ProteinID:ONM19310.1	PFAM:PF04810	PFAM:PF04811	PANTHER:PTHR11141	PANTHER:PTHR11141:SF2	SUPFAM:SSF53300
SUPFAM:SSF81995	SUPFAM:SSF82919	InterPro:Sec23	InterPro:Sec23/24_trunk_dom	TMHMM:TMhelix	UniParc:UPI0008DB345C
EnsemblPlantsGene:Zm00001d004639	EnsemblPlants:Zm00001d004639_P001	EnsemblPlants:Zm00001d004639_T001	InterPro:Znf_Sec23_Sec24	InterPro:Znf_Sec23_Sec24_sf	SEG:seg
InterPro:vWFA_dom_sf	:	:	:	:	:

Description

Sec23/Sec24 protein transport family protein

Coordinates

chr2:+:124625290..124626984

Molecular Weight (calculated)

44541.0 Da

IEP (calculated)

6.811

GRAVY (calculated)

0.150

Length

415 amino acids

Sequence
(BLAST)

001: MWAADPSAAP AAAVVADPDG PDAVRLTWNT WPRSKVEASR CVVPLAATIS PGRVPDPSAA SPPPLPYPPL RCKAPCSALL NPFARVDFAA KIWICPFCFS
101: RNHFPLHYSA ISESNVPAEL FPQCSTVEYI VGGAGVPGVG SSPPPPVFLF VIDTCVIEEE LGYVKMAMRK ATALLPEHAL VGLVTFGTQV HLHELGFSDL
201: SKIYVFRGTK EISKDQILDQ LELSGAGRPG FPMMPQQPSG PQVNGMHPSV TAGVNRFLLP VSECECTLST LLDELQPDQW PVEAGNRAIR CTGVALSVAA
301: GLLGACMPGT GAMIIALLGG PCTEGPGMIV SKDLSEPVRS HKDLDKDAAP HFQKAVKFYD GLAKQLVSQG HVLDVFASAL DQVCIAHCLV SSLCLHLHQY
401: LYFFIHNQKR KSRIF

Best Arabidopsis Sequence Match ( AT1G05520.1 )
(BLAST)

001: MSEMASMDPE GIDGVRMTWN VWPRTKVEAS KCVIPVAACI SPIRYHRDIP SVEYAPLRCR ICTAALNPFA RVDFLAKIWI CPICFQRNHF PPHYHVMSET
101: NVPCELYPQY TTVEYTLPNP SQPTGVGNFD QTGAVSGQPS PSVFVFVLDT CMIEEEFGYA KSALKQAIGL LPENALVGFV SFGTQAHVHE LGFSDLTKVY
201: VFRGDKEISK DQVLEQLGLG ASGRRNPVGG FPMGRDNSAN FGYSGVNRFL LPASDCEFTI DLLLEELQTD QWPVQAGRRQ SRCTGVAISV ATGLLGACFP
301: GTGARIVALI GGPCSEGPGT IVSKDLSEPL RSHKDLDKDA APFYKKAEKF YDALANQLVN QGHVLDLFAS ALDQVGVAEM KAAVERTGGL VVLSESFGHS
401: VFKDSFKRVF EDGEESLGLC FNGTLEICCS KDIKIQGIIG PCASLQKKGP SVADTVIGEG NTTQWKMCGL DKRTCLTVFF DLSSSDQSSA PGGVNNQLYL
501: QFMTSYQNSK GKTLQRVTTV TRQWVDTGLS TEELVQGFDQ ETAAVVVARL ASLKMETEEG FDATRWLDRN LIRLCSKFGD YRKDDPASFT LNPNFSLFPQ
601: FTFNLRRSQF VQVFNNSPDE TAYNRMLLNR ENISNAAVMI QPSLTTYSFN SLPQPALLDV ASIGADRILL LDSYISVVVF HGMTIAQWRN LGYQNQPEHQ
701: AFAQLLEAPQ EDAQMIIRDR FPVPRLVVCD QHGSQARFLL AKLNPSATYN NASEMNAGSD IIFTDDVSLQ VFFQHLQKLA VQS

Arabidopsis Description

At1g05520/T25N20_16 [Source:UniProtKB/TrEMBL;Acc:Q8H0S3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.