CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021056.1-P	Field mustard	cytosol, nucleus, plastid	68.35	42.6
CDY12738	Canola	cytosol	66.91	12.64
CDY12077	Canola	cytosol	66.91	12.62
CDX90271	Canola	cytosol	66.91	12.6
CDY01197	Canola	cytosol	66.19	12.07
Zm00001d004639_P001	Maize	plastid	34.53	11.57
GSMUA_Achr9P30270_001	Banana	plastid	43.17	8.51
CDX86574	Canola	cytosol	45.32	8.21
CDY15544	Canola	cytosol	45.32	8.21
GSMUA_Achr10P...	Banana	cytosol, golgi, plastid	37.41	7.95
Zm00001d049155_P004	Maize	plastid	43.17	7.59
OQU83385	Sorghum	cytosol, plastid	42.45	7.44
GSMUA_Achr1P25630_001	Banana	plastid	38.13	7.18
TraesCS4D01G151400.1	Wheat	golgi	39.57	7.03
TraesCS4B01G163100.3	Wheat	plastid	39.57	7.03
TraesCS4A01G151800.3	Wheat	cytosol, plastid	39.57	7.0
HORVU4Hr1G041690.2	Barley	cytosol, nucleus	39.57	6.63
CDY13800	Canola	cytosol	33.81	6.23
CDX94717	Canola	cytosol	26.62	4.92
CDY22339	Canola	cytosol	25.9	4.86
CDY59754	Canola	cytosol	32.37	4.75
GSMUA_Achr8P33210_001	Banana	cytosol	23.74	4.5
CDY12241	Canola	cytosol	19.42	4.44
Zm00001d004640_P001	Maize	cytosol, plastid	10.79	2.98
GSMUA_Achr11P...	Banana	cytosol	3.6	2.28
Os11t0433500-01	Rice	cytosol, plasma membrane	5.76	2.28
CDY07119	Canola	plastid	13.67	2.17
CDY22008	Canola	plastid	13.67	2.17

Protein Annotations

EnsemblPlants:CDY64015	EnsemblPlantsGene:GSBRNA2T00040793001	Gene3D:3.40.50.410	InterPro:IPR036465	InterPro:Sec23	InterPro:vWFA_dom_sf
PANTHER:PTHR11141	PANTHER:PTHR11141:SF2	ProteinID:CDY64015	ProteinID:CDY64015.1	SUPFAM:SSF53300	UniParc:UPI0004EE35FA
UniProt:A0A078JCE9	MapMan:35.2	:	:	:	:

Description

BnaAnng19150DBnaAnng19150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JCE9]

Coordinates

chrLK034387:+:11497..12830

Molecular Weight (calculated)

15323.0 Da

IEP (calculated)

6.907

GRAVY (calculated)

-0.443

Length

139 amino acids

Sequence
(BLAST)

001: MISETNLPGE LYPLYTTAHV HELGFSEMSK VFVFKGNKEV SKDQVLDQLG LSSRRAPTSG FPKGAQNGFQ SAAGVNRFLL HASDCEYTLD LEERVDNNNG
101: RCPTFVDHQV STLLLATGGG WRNNRGCLIK CCDSRAPDR

Best Arabidopsis Sequence Match ( AT4G14160.3 )
(BLAST)

001: MAEMADKAKV EEMDWEGIDG VRMTWNLWPR TKVEASKCVI PLAASISPIR RHPLILDLPY APLDCKTCKA LLNAFARVDF AAMNWVCPFC YHRNHFPSHY
101: HSISEINLPG ELYPQYTTVE YTLPPDPSRV PPPPVFVFVL DTCMIEEELG YAKSALKQAI GLLPENALVG FVSFGTQAHV HELGFSEMSK VFVFKGNKEV
201: TKDQILDQLG LGSSSRRAPT SGFSKGAQNG FQSSGVDRFL LPASECEYTL DLLLDELQSD QWPVQPGHRP QRCTGVALSV AAGLLGACLP GTGARIVALV
301: GGPCTEGPGT IISKDLSDPV RSHKDLDKDA APYYKKAVKF YDSIAKQLVA QGHVLDLFAS ALDQVGVAEM KVAVESTGGL VVLSESFGHS VFKDSFKRMF
401: EDGEHSLGLC FNGTLEINCS KDIKIQGVIG PCSSLEKKGP NVADTVIGEG NTSAWKLCGL DKSTCLTVFF DLSSTGSTAP GALNQQLYLQ FITRYQNSEG
501: KSLARVTTLT RQWVDTAVST ENLVQGFDQE TAAVVMARLT SLKMETEEGF DATRWLDRTL IRLCSKFGEY RKDDPTSFTL KPYLTLFPQF MFNLRRSQFV
601: QDLRQLCWMW LPLQLTRFFY

Arabidopsis Description

Sec23/Sec24 protein transport family protein [Source:UniProtKB/TrEMBL;Acc:F4JUM1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.