Factsheet for GSMUA_Achr11P16230_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol, plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol, golgi, plastid	79.45	26.61
GSMUA_Achr9P30270_001	Banana	plastid	83.11	25.82
Os11t0433500-01	Rice	cytosol, plasma membrane	40.64	25.36
GSMUA_Achr1P25630_001	Banana	plastid	76.26	22.63
GSMUA_AchrUn_...	Banana	cytosol	56.16	22.61
GSMUA_Achr8P33210_001	Banana	cytosol	74.89	22.37
VIT_05s0062g00130.t01	Wine grape	cytosol	70.78	20.1
CDY12738	Canola	cytosol	67.12	19.97
Bra010748.1-P	Field mustard	cytosol	67.12	19.92
CDX90271	Canola	cytosol	67.12	19.92
CDY12077	Canola	cytosol	66.67	19.81
OQU83385	Sorghum	cytosol, plastid	71.69	19.8
TraesCS4B01G163100.3	Wheat	plastid	70.32	19.69
TraesCS4D01G151400.1	Wheat	golgi	70.32	19.69
Zm00001d049155_P004	Maize	plastid	70.78	19.6
TraesCS4A01G151800.3	Wheat	cytosol, plastid	69.86	19.47
KRG97365	Soybean	cytosol, endoplasmic reticulum, nucleus	68.04	19.45
CDY01197	Canola	cytosol	67.58	19.42
KRH31551	Soybean	endoplasmic reticulum	67.58	19.3
Bra032766.1-P	Field mustard	cytosol	67.58	19.17
CDY15544	Canola	cytosol	67.12	19.17
Bra030613.1-P	Field mustard	cytosol	67.12	19.17
CDX86574	Canola	cytosol	66.67	19.04
Solyc05g053830.2.1	Tomato	cytosol, nucleus, plastid	66.21	18.49
PGSC0003DMT400040714	Potato	cytosol	66.21	18.49
AT4G14160.1	Thale cress	cytosol	64.84	18.37
HORVU4Hr1G041690.2	Barley	cytosol, nucleus	69.41	18.34
AT1G05520.1	Thale cress	cytosol	65.3	18.26
PGSC0003DMT400080958	Potato	cytosol	63.01	18.06
Solyc09g092680.2.1	Tomato	cytosol	63.01	18.02
AT3G23660.2	Thale cress	cytosol	64.84	17.95
CDY12241	Canola	cytosol	43.38	15.62
Zm00001d004640_P001	Maize	cytosol, plastid	32.88	14.31
GSMUA_Achr4P11140_001	Banana	cytosol	12.33	9.82
Zm00001d004639_P001	Maize	plastid	9.13	4.82
GSMUA_Achr11P...	Banana	plastid	15.98	4.07
Bra021056.1-P	Field mustard	cytosol, nucleus, plastid	4.11	4.04
GSMUA_Achr6P20530_001	Banana	plastid	15.53	3.9
CDY64015	Canola	cytosol	2.28	3.6
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	2.28	2.79
GSMUA_Achr6P19740_001	Banana	cytosol, plastid	0.91	2.41
GSMUA_Achr4P11150_001	Banana	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.60.40.1670	MapMan:22.4.1.3.1	Gene3D:3.40.50.410	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0006888	GO:GO:0008150	GO:GO:0016020
GO:GO:0030127	EnsemblPlantsGene:GSMUA_Achr11G16230_001	EnsemblPlants:GSMUA_Achr11P16230_001	EnsemblPlants:GSMUA_Achr11T16230_001	InterPro:IPR036465	UniProt:M0RSQ3
PFAM:PF04811	PFAM:PF08033	PANTHER:PTHR11141	PANTHER:PTHR11141:SF2	SUPFAM:SSF53300	SUPFAM:SSF81995
InterPro:Sec23	InterPro:Sec23/24_trunk_dom	InterPro:Sec23_24_beta_S	UniParc:UPI0002965971	InterPro:vWFA_dom_sf	:

Description

Putative Protein transport protein Sec23A [Source:GMGC_GENE;Acc:GSMUA_Achr11G16230_001]

Coordinates

chr11:-:17895216..17898743

Molecular Weight (calculated)

24178.1 Da

IEP (calculated)

4.742

GRAVY (calculated)

0.049

Length

219 amino acids

Sequence
(BLAST)

001: MICRLCQTIN QSQFQLVSQG HVLDLFASAL DQVGVAEMKV AVERTGGLVV LAESFGHPVF KDSSFKRIFE DGEQSLGLSF NGTLEINCSK DVKIQGIIGP
101: CTSMEKGALC ADTIVGQGNT TSWKMCGLDR STCLTVFFDI SPSEFTNVMV TCSYQNPEGQ MRLRVTTITR AWVDGSNTEE LVGGFDQETT AVVLARYFSL
201: KMEMEVRKVL HTWMDVFTP

Best Arabidopsis Sequence Match ( AT1G05520.1 )
(BLAST)

001: MSEMASMDPE GIDGVRMTWN VWPRTKVEAS KCVIPVAACI SPIRYHRDIP SVEYAPLRCR ICTAALNPFA RVDFLAKIWI CPICFQRNHF PPHYHVMSET
101: NVPCELYPQY TTVEYTLPNP SQPTGVGNFD QTGAVSGQPS PSVFVFVLDT CMIEEEFGYA KSALKQAIGL LPENALVGFV SFGTQAHVHE LGFSDLTKVY
201: VFRGDKEISK DQVLEQLGLG ASGRRNPVGG FPMGRDNSAN FGYSGVNRFL LPASDCEFTI DLLLEELQTD QWPVQAGRRQ SRCTGVAISV ATGLLGACFP
301: GTGARIVALI GGPCSEGPGT IVSKDLSEPL RSHKDLDKDA APFYKKAEKF YDALANQLVN QGHVLDLFAS ALDQVGVAEM KAAVERTGGL VVLSESFGHS
401: VFKDSFKRVF EDGEESLGLC FNGTLEICCS KDIKIQGIIG PCASLQKKGP SVADTVIGEG NTTQWKMCGL DKRTCLTVFF DLSSSDQSSA PGGVNNQLYL
501: QFMTSYQNSK GKTLQRVTTV TRQWVDTGLS TEELVQGFDQ ETAAVVVARL ASLKMETEEG FDATRWLDRN LIRLCSKFGD YRKDDPASFT LNPNFSLFPQ
601: FTFNLRRSQF VQVFNNSPDE TAYNRMLLNR ENISNAAVMI QPSLTTYSFN SLPQPALLDV ASIGADRILL LDSYISVVVF HGMTIAQWRN LGYQNQPEHQ
701: AFAQLLEAPQ EDAQMIIRDR FPVPRLVVCD QHGSQARFLL AKLNPSATYN NASEMNAGSD IIFTDDVSLQ VFFQHLQKLA VQS

Arabidopsis Description

At1g05520/T25N20_16 [Source:UniProtKB/TrEMBL;Acc:Q8H0S3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.