Factsheet for GSMUA_AchrUn_randomP15830_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 2
endoplasmic reticulum 1
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004550	Potato	cytosol	82.12	64.47
GSMUA_Achr6P19740_001	Banana	cytosol, plastid	25.7	55.42
GSMUA_Achr4P11140_001	Banana	cytosol	47.49	30.91
GSMUA_Achr10P...	Banana	cytosol, golgi, plastid	75.98	20.8
Os08t0474700-01	Rice	plasma membrane	86.59	20.31
VIT_15s0045g00540.t01	Wine grape	cytosol	87.15	19.97
HORVU4Hr1G014740.3	Barley	cytosol	84.36	19.84
TraesCS4B01G085800.1	Wheat	cytosol	84.36	19.79
TraesCS4A01G230100.1	Wheat	cytosol	83.8	19.66
OQU80636	Sorghum	cytosol	82.68	19.4
EER96867	Sorghum	cytosol	82.12	19.29
Solyc01g081070.2.1	Tomato	cytosol, nucleus	82.12	19.24
Zm00001d005902_P001	Maize	cytosol	81.56	19.16
KRH66226	Soybean	cytosol, endoplasmic reticulum	81.01	18.9
TraesCS5B01G239200.1	Wheat	cytosol	80.45	18.9
TraesCS5A01G241100.1	Wheat	nucleus	80.45	18.9
GSMUA_Achr9P30270_001	Banana	plastid	74.3	18.87
HORVU5Hr1G068810.2	Barley	cytosol	79.89	18.77
KRH07342	Soybean	cytosol	79.33	18.56
GSMUA_Achr1P25630_001	Banana	plastid	73.74	17.89
GSMUA_Achr8P33210_001	Banana	cytosol	73.18	17.87
AT2G21630.1	Thale cress	cytosol	72.07	16.95
CDY13800	Canola	cytosol	69.27	16.45
Bra031206.1-P	Field mustard	cytosol	67.6	16.11
TraesCS5D01G247600.1	Wheat	cytosol, plastid	81.56	15.9
TraesCS4D01G083800.1	Wheat	cytosol	56.98	14.25
CDY59754	Canola	cytosol	69.27	13.09
TraesCS6B01G307800.1	Wheat	cytosol	40.22	10.76
GSMUA_Achr6P20530_001	Banana	plastid	21.79	4.47
GSMUA_Achr11P...	Banana	plastid	21.23	4.41
GSMUA_Achr11P...	Banana	cytosol	2.79	2.28
EER99932	Sorghum	cytosol	2.79	1.38
GSMUA_Achr4P11150_001	Banana	cytosol	2.23	1.02
GSMUA_AchrUn_...	Banana	cytosol	0.56	0.18
Os09t0460200-00	Rice	plasma membrane	0.56	0.17

Protein Annotations

Gene3D:1.20.120.730	MapMan:22.4.1.3.1	Gene3D:3.40.20.10	InterPro:ADF-H/Gelsolin-like_dom_sf	GO:GO:0000139	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0006886
GO:GO:0006888	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	GO:GO:0016020	GO:GO:0016043
GO:GO:0030127	GO:GO:0090114	EnsemblPlantsGene:GSMUA_AchrUn_randomG15830_001	EnsemblPlants:GSMUA_AchrUn_randomP15830_001	EnsemblPlants:GSMUA_AchrUn_randomT15830_001	InterPro:Gelsolin-like_dom
InterPro:Gelsolin-like_dom_sf	InterPro:IPR029006	UniProt:M0U9J2	PFAM:PF00626	PANTHER:PTHR11141	PANTHER:PTHR11141:SF2
SUPFAM:SSF81811	SUPFAM:SSF82754	InterPro:Sec23	InterPro:Sec23/24_helical_dom_sf	InterPro:Sec23_C	UniParc:UPI0002969B51

Description

Protein transport protein SEC23 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG15830_001]

Coordinates

chrchrUn_random:-:75382759..75388333

Molecular Weight (calculated)

20324.2 Da

IEP (calculated)

5.842

GRAVY (calculated)

-0.089

Length

179 amino acids

Sequence
(BLAST)

001: MFHLRRSQFV FNNSPDETAY YRMILNRENV ANAVVMIQPS LISYSFHSAP EPVLLDVTAI AADRILLLDS YFTVVVFHGI SIAQWRNAGY QNQPEHETFA
101: HLLQAPRDEA DAITKERFPV PRLVVCDQHG SQARFLLVKL NPSVTYNSDN PPPPGGDIIF TDDVSFQVFL DHLQRLAVQ

Best Arabidopsis Sequence Match ( AT1G05520.1 )
(BLAST)

001: MSEMASMDPE GIDGVRMTWN VWPRTKVEAS KCVIPVAACI SPIRYHRDIP SVEYAPLRCR ICTAALNPFA RVDFLAKIWI CPICFQRNHF PPHYHVMSET
101: NVPCELYPQY TTVEYTLPNP SQPTGVGNFD QTGAVSGQPS PSVFVFVLDT CMIEEEFGYA KSALKQAIGL LPENALVGFV SFGTQAHVHE LGFSDLTKVY
201: VFRGDKEISK DQVLEQLGLG ASGRRNPVGG FPMGRDNSAN FGYSGVNRFL LPASDCEFTI DLLLEELQTD QWPVQAGRRQ SRCTGVAISV ATGLLGACFP
301: GTGARIVALI GGPCSEGPGT IVSKDLSEPL RSHKDLDKDA APFYKKAEKF YDALANQLVN QGHVLDLFAS ALDQVGVAEM KAAVERTGGL VVLSESFGHS
401: VFKDSFKRVF EDGEESLGLC FNGTLEICCS KDIKIQGIIG PCASLQKKGP SVADTVIGEG NTTQWKMCGL DKRTCLTVFF DLSSSDQSSA PGGVNNQLYL
501: QFMTSYQNSK GKTLQRVTTV TRQWVDTGLS TEELVQGFDQ ETAAVVVARL ASLKMETEEG FDATRWLDRN LIRLCSKFGD YRKDDPASFT LNPNFSLFPQ
601: FTFNLRRSQF VQVFNNSPDE TAYNRMLLNR ENISNAAVMI QPSLTTYSFN SLPQPALLDV ASIGADRILL LDSYISVVVF HGMTIAQWRN LGYQNQPEHQ
701: AFAQLLEAPQ EDAQMIIRDR FPVPRLVVCD QHGSQARFLL AKLNPSATYN NASEMNAGSD IIFTDDVSLQ VFFQHLQKLA VQS

Arabidopsis Description

At1g05520/T25N20_16 [Source:UniProtKB/TrEMBL;Acc:Q8H0S3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.