Factsheet for Solyc01g081070.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus

Predictor Summary:

nucleus 1
endoplasmic reticulum 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004550	Potato	cytosol	29.45	98.68
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	19.24	82.12
VIT_15s0045g00540.t01	Wine grape	cytosol	78.93	77.21
Os08t0474700-01	Rice	plasma membrane	76.83	76.93
KRH07342	Soybean	cytosol	76.7	76.6
KRH66226	Soybean	cytosol, endoplasmic reticulum	76.18	75.88
Zm00001d005902_P001	Maize	cytosol	74.74	74.93
OQU80636	Sorghum	cytosol	74.74	74.84
EER96867	Sorghum	cytosol	74.48	74.67
GSMUA_AchrUn_...	Banana	cytosol	52.62	73.9
TraesCS4B01G085800.1	Wheat	cytosol	73.43	73.53
TraesCS4A01G230100.1	Wheat	cytosol	73.17	73.26
TraesCS6B01G307800.1	Wheat	cytosol	64.14	73.24
HORVU4Hr1G014740.3	Barley	cytosol	72.77	73.06
TraesCS5B01G239200.1	Wheat	cytosol	72.25	72.44
TraesCS5A01G241100.1	Wheat	nucleus	72.25	72.44
HORVU5Hr1G068810.2	Barley	cytosol	72.12	72.31
TraesCS4D01G083800.1	Wheat	cytosol	67.28	71.79
AT2G21630.1	Thale cress	cytosol	67.41	67.67
CDY13800	Canola	cytosol	64.79	65.65
Bra031206.1-P	Field mustard	cytosol	63.22	64.31
EER99932	Sorghum	cytosol	29.45	62.15
Solyc09g092680.2.1	Tomato	cytosol	61.65	61.49
Os09t0460200-00	Rice	plasma membrane	46.34	61.35
Solyc05g053830.2.1	Tomato	cytosol, nucleus, plastid	62.7	61.1
TraesCS5D01G247600.1	Wheat	cytosol, plastid	71.73	59.7
CDY59754	Canola	cytosol	62.96	50.79
Solyc03g005380.2.1	Tomato	cytosol, golgi, plasma membrane	43.46	42.67
Solyc11g056380.1.1	Tomato	cytosol	4.45	22.22
Solyc09g055810.1.1	Tomato	cytosol	1.96	18.99
Solyc01g080850.2.1	Tomato	plastid	17.54	15.31
Solyc02g021380.1.1	Tomato	plastid	1.57	14.81

Protein Annotations

Gene3D:1.20.120.730	Gene3D:2.30.30.380	Gene3D:2.60.40.1670	MapMan:22.4.1.3.1	Gene3D:3.40.20.10	Gene3D:3.40.50.410
InterPro:ADF-H/Gelsolin-like_dom_sf	GO:GO:0000139	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0006886	GO:GO:0006888
GO:GO:0008150	GO:GO:0008270	GO:GO:0009987	GO:GO:0015031	GO:GO:0016020	GO:GO:0016043
GO:GO:0030127	GO:GO:0090114	InterPro:Gelsolin-like_dom	InterPro:Gelsolin-like_dom_sf	InterPro:IPR029006	InterPro:IPR036465
UniProt:K4AXZ9	PFAM:PF00626	PFAM:PF04810	PFAM:PF04811	PFAM:PF04815	PFAM:PF08033
PANTHER:PTHR11141	PANTHER:PTHR11141:SF2	SUPFAM:SSF53300	SUPFAM:SSF81811	SUPFAM:SSF81995	SUPFAM:SSF82754
SUPFAM:SSF82919	InterPro:Sec23	InterPro:Sec23/24_helical_dom	InterPro:Sec23/24_helical_dom_sf	InterPro:Sec23/24_trunk_dom	InterPro:Sec23_24_beta_S
InterPro:Sec23_C	EnsemblPlantsGene:Solyc01g081070.2	EnsemblPlants:Solyc01g081070.2.1	UniParc:UPI000276296E	InterPro:Znf_Sec23_Sec24	InterPro:Znf_Sec23_Sec24_sf
InterPro:vWFA_dom_sf	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:80396307..80417944

Molecular Weight (calculated)

84569.5 Da

IEP (calculated)

6.091

GRAVY (calculated)

0.001

Length

764 amino acids

Sequence
(BLAST)

001: MTEFLELETQ DAVRMPWNVL PGSKSEAAQC VIPVSAIYTP LKPFPDTPTL PYAPLRCRNC RSVLNPFSIV DFSSTKIWIC CFCLQRNHFP PSYQSISETN
101: MPAELFPQYT TIEYETPSEK ASLTNPVFLF VIDTCVIEEE IGYLKSSLLQ VVGTLPENCL IGLITFGTYV HVHELGFGQI PKVYVFKGSK EVSKDQVLEQ
201: MGFFANKLKP TTGVIAGVRD GLSQESISRF LLPASECEFT LNSILEELQR DPWPVPADHR AARCTGTALS VASHLLGICV PGSGARIMAF LGGPSTEGPG
301: AIVSKILSEP IRSHKDLDKD SAPLYHKAVK FYEGISKQLV HQGHVLDVFA CALEQVGLAE IKVACEKTGG LVVLAESFGH SVFKDSLKQV FQSGGNDLGL
401: ASNGIFEVNC SKDIKVQGVI GPSASLEKKG PLCSEVVVGQ GNTTAWKMCG LDKSSTFCLI FEVAKKESPD AIAQSANPQF YFQFLTYYQH SSGQMRLRVT
501: TLSRRWVAGP GSVQDLIAGF DQEAAAVVMA RQVSFKMETE ADFDPIRWLD KSLIHICSRF GDYQKDTPSS FTLSPRFSIF PQFMFHLRRS QFVQVFGNSP
601: DETAYFRMIL NRENVANSVV MIQPSLISYS FHSGPEPVLL DVAAIAAERI LLLDSYFTIV VFHGSTIAQW RKLGYHEQPE HQAFAELLKS PREDAEAIVH
701: ERFPVPRLVI CDQYGSQARF MLAKLNPSAT YNSDAPPIPG GDIIFTDDVS FEVFLDHLQR LAVH

Best Arabidopsis Sequence Match ( AT2G21630.1 )
(BLAST)

001: MAEFGELEAQ DGVRMPWNII PVATKKEQSI DSEVPVSAIY TPLKPLRSQS LLLPYSPLRC RTCRSVLNPY SVVDFSACNW GCPFCFNRNP FPLNYSSVAD
101: NNLPPELFPH STTVEYLCDS FSSPSPPVFL FVVDTCLISE ELDFLKSSLF QALDLLPDTS ILGLITFDSL VRVYELGFPH CTKSYFFHGN KDCTKDQLLD
201: QLSFFVKNPK PSSGVIAGAR DGLSSDDIAR FLLPASDCHF TLHSVLEELG NSPWPVAADH RPARCTGVAL RIAASLLGAC FPGSAARIMA FIGGPSTQGP
301: GAIVSRELSD PIRSHKDIDK DSAMYYHKAV EFYEMLAKQL VHQGHVLDVF ASSVDQVGIA ELKVAVEQTG GFVVLAESFG HSVFRDSLKR VCQSGENDLG
401: LSSCGIFEIN CSKDIKVQGI IGPCASLEKK GPLCSDTAIG QGHTSAWKMC GLDNNTSICL VFEIAKIDTA DVVLQSQSNQ FYFQFLTYYQ HSNGQTRLRV
501: TTLSRRWVMG TESLQELSNG FDQEAAAVVM ARLISSKMET QPEFNPQRWV DKALINLCTW FGDYQKGNPS SFSLSSQLSI FPQFVFHLRR SQFVQVFNNS
601: PDETAYFRMI LYRENVSNSV VMIQPSLISF SFHSPPEPIL LDVASIAADR ILLLDSYFTL VIFHGSTIAQ WRKAGYHNQP EHQAFGHLLQ SPRDYADTIM
701: SERFPTPRLV ICDQYGSQAR FLLAKLNPCD GDAHFSGQSN VFTDDVSLSV FLDHLRRLIV H

Arabidopsis Description

At2g21630 [Source:UniProtKB/TrEMBL;Acc:Q9SIJ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.