Factsheet for PGSC0003DMT400004550

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
endoplasmic reticulum 1
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	64.47	82.12
Solyc01g081070.2.1	Tomato	cytosol, nucleus	98.68	29.45
VIT_15s0045g00540.t01	Wine grape	cytosol	85.96	25.1
Os08t0474700-01	Rice	plasma membrane	82.46	24.64
KRH66226	Soybean	cytosol, endoplasmic reticulum	81.58	24.25
KRH07342	Soybean	cytosol	80.7	24.05
EER96867	Sorghum	cytosol	78.51	23.49
Zm00001d005902_P001	Maize	cytosol	78.07	23.36
OQU80636	Sorghum	cytosol	78.07	23.33
HORVU4Hr1G014740.3	Barley	cytosol	77.63	23.26
TraesCS4A01G230100.1	Wheat	cytosol	77.63	23.2
TraesCS4B01G085800.1	Wheat	cytosol	77.63	23.2
TraesCS5A01G241100.1	Wheat	nucleus	76.75	22.97
TraesCS5B01G239200.1	Wheat	cytosol	76.32	22.83
HORVU5Hr1G068810.2	Barley	cytosol	75.88	22.7
AT2G21630.1	Thale cress	cytosol	72.81	21.81
CDY13800	Canola	cytosol	69.3	20.95
PGSC0003DMT400080958	Potato	cytosol	69.74	20.81
PGSC0003DMT400040714	Potato	cytosol	71.05	20.66
Bra031206.1-P	Field mustard	cytosol	67.54	20.51
TraesCS5D01G247600.1	Wheat	cytosol, plastid	77.63	19.28
TraesCS4D01G083800.1	Wheat	cytosol	58.33	18.58
CDY59754	Canola	cytosol	69.3	16.68
TraesCS6B01G307800.1	Wheat	cytosol	47.81	16.29
EER99932	Sorghum	cytosol	4.39	2.76
GSMUA_AchrUn_...	Banana	cytosol	2.19	0.92
Os09t0460200-00	Rice	plasma membrane	0.44	0.17
PGSC0003DMT400034845	Potato	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.20.120.730	MapMan:22.4.1.3.1	Gene3D:3.40.20.10	InterPro:ADF-H/Gelsolin-like_dom_sf	GO:GO:0000139	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0006886
GO:GO:0006888	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	GO:GO:0016020	GO:GO:0016043
GO:GO:0030127	GO:GO:0090114	InterPro:Gelsolin-like_dom	InterPro:Gelsolin-like_dom_sf	InterPro:IPR029006	UniProt:M0ZNM4
PFAM:PF00626	PFAM:PF04815	EnsemblPlantsGene:PGSC0003DMG400001808	PGSC:PGSC0003DMG400001808	EnsemblPlants:PGSC0003DMT400004550	PANTHER:PTHR11141
PANTHER:PTHR11141:SF2	SUPFAM:SSF81811	SUPFAM:SSF82754	InterPro:Sec23	InterPro:Sec23/24_helical_dom	InterPro:Sec23/24_helical_dom_sf
InterPro:Sec23_C	UniParc:UPI0002964CA3	SEG:seg	:	:	:

Description

Protein transport protein sec23 [Source:PGSC_GENE;Acc:PGSC0003DMG400001808]

Coordinates

chr1:-:67656226..67658773

Molecular Weight (calculated)

26070.0 Da

IEP (calculated)

5.539

GRAVY (calculated)

-0.086

Length

228 amino acids

Sequence
(BLAST)

001: METEADFDPI RWLDKSLIHI CSRFGDYQKD TPSSFTLSPR FSIFPQFIFH LRRSQFVQVF GNSPDETAYF RMILNRENVA NSVVMIQPSL ISYSFHSGPE
101: PVLLDVAAIA ADRILLLDSY FTIVVFHGST IAQWRKLGYH EQPEHQAFAE LLKSPREDAE AIVRERFPVP RLVICDQYGS QARFMLAKLN PSATYNSDAP
201: PIPGGDIIFT DDVSFEVFLD HLQRLAVH

Best Arabidopsis Sequence Match ( AT4G14160.1 )
(BLAST)

001: MAEMADKAKV EEMDWEGIDG VRMTWNLWPR TKVEASKCVI PLAASISPIR RHPLILDLPY APLDCKTCKA LLNAFARVDF AAMNWVCPFC YHRNHFPSHY
101: HSISEINLPG ELYPQYTTVE YTLPPDPSRV PPPPVFVFVL DTCMIEEELG YAKSALKQAI GLLPENALVG FVSFGTQAHV HELGFSEMSK VFVFKGNKEV
201: TKDQILDQLG LGSSSRRAPT SGFSKGAQNG FQSSGVDRFL LPASECEYTL DLLLDELQSD QWPVQPGHRP QRCTGVALSV AAGLLGACLP GTGARIVALV
301: GGPCTEGPGT IISKDLSDPV RSHKDLDKDA APYYKKAVKF YDSIAKQLVA QGHVLDLFAS ALDQVGVAEM KVAVESTGGL VVLSESFGHS VFKDSFKRMF
401: EDGEHSLGLC FNGTLEINCS KDIKIQGVIG PCSSLEKKGP NVADTVIGEG NTSAWKLCGL DKSTCLTVFF DLSSTGSTAP GALNQQLYLQ FITRYQNSEG
501: KSLARVTTLT RQWVDTAVST EVNLVQGFDQ ETAAVVMARL TSLKMETEEG FDATRWLDRT LIRLCSKFGE YRKDDPTSFT LKPYLTLFPQ FMFNLRRSQF
601: VQVFNNSPDE TAYFRMLLNR ENISNAIVMI QPSLTSYSFN SGPQAALLDV ASIAADKILL LDAYFSVVVF HGMTISQWRN MGYHHQPEHE AFAQLLQAPQ
701: EDSQMLVRER FPVPRLVVCD QHGSQARFLL AKLNPSATYN NANEMSAGSD IIFTDDVSLQ VFIEHLQKLA VQS

Arabidopsis Description

Sec23/Sec24 protein transport family protein [Source:UniProtKB/TrEMBL;Acc:F4JUM1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.