Factsheet for PGSC0003DMT400034845

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 1
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, vacuole
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006495

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43670.1	PGSC0003DMT400006495	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P11150_001	Banana	cytosol	48.78	30.61
Solyc03g005380.2.1	Tomato	cytosol, golgi, plasma membrane	92.68	29.31
AT5G43670.1	Thale cress	cytosol	57.72	17.88
Bra033691.1-P	Field mustard	cytosol	53.66	17.84
CDX94717	Canola	cytosol	54.47	17.82
CDY22339	Canola	cytosol	53.25	17.7
KRG97332	Soybean	cytosol	45.94	15.48
TraesCS5B01G386700.1	Wheat	cytosol	42.68	13.96
TraesCS5D01G391900.1	Wheat	cytosol	42.28	13.83
TraesCS5A01G382500.2	Wheat	cytosol	41.46	13.56
EER93475	Sorghum	cytosol	41.46	13.55
Os03t0742800-02	Rice	cytosol	41.46	13.47
Zm00001d013301_P002	Maize	cytosol	41.06	13.41
VIT_05s0020g04710.t01	Wine grape	plasma membrane	61.38	13.33
Zm00001d033975_P002	Maize	cytosol	41.06	12.88
PGSC0003DMT400080958	Potato	cytosol	35.37	11.39
PGSC0003DMT400040714	Potato	cytosol	34.96	10.97
HORVU5Hr1G094210.8	Barley	cytosol, plastid	12.6	4.13
GSMUA_Achr4P11140_001	Banana	cytosol	2.03	1.82
PGSC0003DMT400004550	Potato	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.30.30.380	Gene3D:3.40.50.410	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0006888
GO:GO:0008150	GO:GO:0008270	GO:GO:0016020	GO:GO:0030127	InterPro:IPR036465	UniProt:M1B1D5
PFAM:PF04810	PFAM:PF04811	EnsemblPlantsGene:PGSC0003DMG400013394	PGSC:PGSC0003DMG400013394	EnsemblPlants:PGSC0003DMT400034845	PANTHER:PTHR11141
PANTHER:PTHR11141:SF4	SUPFAM:SSF53300	SUPFAM:SSF81995	SUPFAM:SSF82919	InterPro:Sec23	InterPro:Sec23/24_trunk_dom
UniParc:UPI000296C617	InterPro:Znf_Sec23_Sec24	InterPro:Znf_Sec23_Sec24_sf	SEG:seg	InterPro:vWFA_dom_sf	:

Description

Protein transport protein sec23 [Source:PGSC_GENE;Acc:PGSC0003DMG400013394]

Coordinates

chr3:+:406669..407409

Molecular Weight (calculated)

27340.9 Da

IEP (calculated)

4.639

GRAVY (calculated)

0.113

Length

246 amino acids

Sequence
(BLAST)

001: MDFVELEAIE GLRWSWNSWP VSKSEASGLI IPLSIMCTPL MHFNELPVLP YDPLICTQCG AVLNPYARVD YQSRIWVCPF CYRKNPFPKS YLGINENNIP
101: AELFPTYSTV EYHLGKRGLA QNPNSSSNFG NMSLSSKMPS FSSTSSSLDW AGYGIGPAFV FVVDACTSDE ELGVVKNELL HVIAQLPETA LVGLVVFDSM
201: VRVYDLGFGE CCRVVMFHGE RELSSEQVKC DILSKPLSMC LSSSVY

Best Arabidopsis Sequence Match ( AT5G43670.1 )
(BLAST)

001: MDFLELEAIE GLRWSWNSWP TTKSDCESLV VPLSIMYTPL MHFSELPTIP YDPLICSRCG AVLNPYARVD YQSRIWSCPF CFHKNLFPRS YSGITETNLP
101: AELFPTYSAV EYSPLPSRQS GSNTTTPTAA ASWSNGFNQG VRSMPSNSSF SSLASSTVGG GGGVISELGP AFVFVVDASM VEDELRAVRS DVLFVIEQLP
201: ENCLVALITF DSMVRVYDLG FSECSKVVVF HGERDLSPDQ IQQFLGLGYS KQFHHGKMSA IRKQSFLLPL VECEFNLTSA FEEIIPLVDV KPGHRPHRST
301: GAAISTALGL LEGCSVTTGS RIMVFTSGPA TRGPGIIVDS DLSNSIRTHR DIITGHVSYY DKSCGFYKKL AKRLCDSSVV LDVFACSLDQ VGAAELRYAV
401: EMSGGFLLLG ETFESEQFKK CLRHIFIRDA DGNLSMYFDV SLEVVTTKDM RICGALGPVV SLRQKNDIVS ETEIGEGGTY MWKTSTVTNK TCVSFFFHVS
501: NEQNRKPQPG SAFFIQFITR YRYGNGAMRK RVTTVARRWV AGKSPEISSS FDQETAASVM ARLAINRAEE CHARDVITWL DNGLIRFASR FGDYIQEDPS
601: SFRLTPNFSL YPQFMFYLRR SQFLDVFNNS PDETGFFRLM LNREGVVNSI IMIQPTLLRY SFDGPPVPVL LDIRSVTPDV ILLFDSYFYV VIHHGSKIAQ
701: WRKLEYHKDP SHETFRNLLE APEIDAAQLV TDRIPMPRIV RCDQHGSQAR FLLAKLNPSV TQKTDHTGGS DIVLTDDMSL QDFLEDLQSL AVKG

Arabidopsis Description

At5g43670 [Source:UniProtKB/TrEMBL;Acc:Q84WI4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.