Factsheet for VIT_05s0020g04710.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
endoplasmic reticulum 1
cytosol 1
plastid 1
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_09s0002g03770.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43670.1	VIT_09s0002g03770.t01	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P11140_001	Banana	cytosol	17.83	73.45
Solyc03g005380.2.1	Tomato	cytosol, golgi, plasma membrane	50.13	73.01
KRG97332	Soybean	cytosol	44.92	69.73
Bra033691.1-P	Field mustard	cytosol	44.92	68.78
CDY22339	Canola	cytosol	44.84	68.65
CDX94717	Canola	cytosol	44.66	67.29
AT5G43670.1	Thale cress	cytosol	46.87	66.88
EER93475	Sorghum	cytosol	43.16	64.94
Zm00001d013301_P002	Maize	cytosol	42.9	64.54
TraesCS5D01G391900.1	Wheat	cytosol	42.63	64.23
TraesCS5A01G382500.2	Wheat	cytosol	42.45	63.96
TraesCS5B01G386700.1	Wheat	cytosol	42.37	63.83
Os03t0742800-02	Rice	cytosol	42.63	63.8
PGSC0003DMT400034845	Potato	cytosol	13.33	61.38
Zm00001d033975_P002	Maize	cytosol	42.01	60.71
HORVU5Hr1G094210.8	Barley	cytosol, plastid	36.19	54.67
GSMUA_Achr4P11150_001	Banana	cytosol	17.12	49.49
VIT_05s0062g00130.t01	Wine grape	cytosol	31.07	45.66
VIT_15s0045g00540.t01	Wine grape	cytosol	30.19	43.79
VIT_07s0005g02630.t01	Wine grape	plastid	10.59	13.73

Protein Annotations

Gene3D:1.20.120.1770	Gene3D:1.20.120.730	EntrezGene:100249428	wikigene:100249428	MapMan:22.4.1.3.1	Gene3D:3.40.20.10
InterPro:ADF-H/Gelsolin-like_dom_sf	ProteinID:CCB50497	ProteinID:CCB50497.1	InterPro:Cyt_b561/ferric_Rdtase_TM	InterPro:DOMON_domain	UniProt:F6HDY2
EMBL:FN595749	GO:GO:0000139	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0006886	GO:GO:0006888
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009987	GO:GO:0015031	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0030127	GO:GO:0055114	GO:GO:0090114	InterPro:Gelsolin-like_dom
InterPro:Gelsolin-like_dom_sf	InterPro:IPR005018	InterPro:IPR006593	InterPro:IPR029006	InterPro:IPR036465	EntrezGene:LOC100249428
wikigene:LOC100249428	PFAM:PF00626	PFAM:PF03188	PFAM:PF04526	PFAM:PF04810	PFAM:PF04811
PFAM:PF04815	PFAM:PF08033	PFscan:PS50836	PFscan:PS50939	PANTHER:PTHR11141	PANTHER:PTHR11141:SF4
SMART:SM00665	SUPFAM:SSF53300	SUPFAM:SSF81811	SUPFAM:SSF81995	SUPFAM:SSF82754	SUPFAM:SSF82919
InterPro:Sec23	InterPro:Sec23/24_helical_dom	InterPro:Sec23/24_helical_dom_sf	InterPro:Sec23/24_trunk_dom	InterPro:Sec23_24_beta_S	InterPro:Sec23_C
TMHMM:TMhelix	UniParc:UPI00021081C2	ArrayExpress:VIT_05s0020g04710	EnsemblPlantsGene:VIT_05s0020g04710	EnsemblPlants:VIT_05s0020g04710.t01	unigene:Vvi.22164
RefSeq:XP_002284161	RefSeq:XP_002284161.1	InterPro:Znf_Sec23_Sec24	InterPro:Znf_Sec23_Sec24_sf	SEG:seg	InterPro:vWFA_dom_sf

Description

No Description!

Coordinates

chr5:+:6568682..6574067

Molecular Weight (calculated)

126187.0 Da

IEP (calculated)

7.242

GRAVY (calculated)

-0.010

Length

1133 amino acids

Sequence
(BLAST)

0001: MDFVELETIE GLRWTWNSWP PFKPDASALV IPLSIMCTPL MQSSELPLLQ YDPLICSRCG AVLNPYARVE YQSRIWVCPF CYQKNSFPRS YSGIGENNLP
0101: AELFPTYSTV EYQLGRKSSN PTSNLNLNPN PNWGNGTMSS SSLSSFRSSS SLVSSFSSSS LSGADSRVLG PAFVFVVDAC SAAEELRALK NELLHVLAQL
0201: PENTMVGLVT FDSMVCVHDL CFAECSRVVL FHGDRELSSD QIQEFLGITR TKQQQLGKTP TAEKQTFLVP VSECEFSITT AIEEIHSSVQ VLPGHRPLRS
0301: TGAAISAAIG LLEGCLVNKG SRIMVFTSGP ATVGPGIIVN SDLSNAIRTH RDLINGHAPY YRKSSGFYKK LSQRLSDASI VLDLFACSLD QVGASELKVP
0401: VETSGGFMML GESFESDQFR KCLRHIFNRD EEGNLMMYFD STIEIVTTKD VKLCGALGPC VSLRKKNSLV SENEIGEGGT YMWKLGTLTN KTCIAFFFQV
0501: GDEQKVQPGS AFFIQFITRY LHGNMGMRKR VTTVARRWVG KHSPEIAAGF DQEAAASVMA RLAIHRAETC YARDVIRWLD NELIRFASKF GDYIQEDPSS
0601: FRLSANFSLY PQFMYHLRRS QFIDIFNSSP DETAFFRLML NREGVVGSVI MIQPTLFQYS FDGPPVPVLL DVRSISPDVI LLFDSYFYVV IHYGSKIAQW
0701: RKLGYDRDPN NENLRKLLEA PELDAEQVVA ERIPVPKLIK CDQHSSQARF LLAKLNPSVT QHSTHTDGMD FIFTDDFSLQ VFIEHLQTLA VQVLDSSIHW
0801: NYDPSSQLVQ LAYRKTGVAP STWISWAINP TTRGMVGSQA LVAFQGTDGS MTVYTSPITS YQTQLQQGSL SFPVFDLSAM QENCDMIIFA TIQLPGNTTM
0901: VNHVWQEGPV YGNVPGIHAL SGANMQSFGS IDFLSKKTAA TRGSGKSWDM KTVDVLVNTI SWGTLMPIGV IIARYLKASN TGPAWFYLHV FCQCTAYAAG
1001: VFGRATDLIL DYRSLGIQHT IHRYIGIALI VSATLQVLAL FLRPKEEHKL RQIWNIYHHL IGYGTIILGV FNVFKGFDIL KPQKKWKIIY ILVISGLGII
1101: SVGLEFIMTY VKSKPKKAVV HGQAPPNPQE EEA

Best Arabidopsis Sequence Match ( AT5G43670.1 )
(BLAST)

001: MDFLELEAIE GLRWSWNSWP TTKSDCESLV VPLSIMYTPL MHFSELPTIP YDPLICSRCG AVLNPYARVD YQSRIWSCPF CFHKNLFPRS YSGITETNLP
101: AELFPTYSAV EYSPLPSRQS GSNTTTPTAA ASWSNGFNQG VRSMPSNSSF SSLASSTVGG GGGVISELGP AFVFVVDASM VEDELRAVRS DVLFVIEQLP
201: ENCLVALITF DSMVRVYDLG FSECSKVVVF HGERDLSPDQ IQQFLGLGYS KQFHHGKMSA IRKQSFLLPL VECEFNLTSA FEEIIPLVDV KPGHRPHRST
301: GAAISTALGL LEGCSVTTGS RIMVFTSGPA TRGPGIIVDS DLSNSIRTHR DIITGHVSYY DKSCGFYKKL AKRLCDSSVV LDVFACSLDQ VGAAELRYAV
401: EMSGGFLLLG ETFESEQFKK CLRHIFIRDA DGNLSMYFDV SLEVVTTKDM RICGALGPVV SLRQKNDIVS ETEIGEGGTY MWKTSTVTNK TCVSFFFHVS
501: NEQNRKPQPG SAFFIQFITR YRYGNGAMRK RVTTVARRWV AGKSPEISSS FDQETAASVM ARLAINRAEE CHARDVITWL DNGLIRFASR FGDYIQEDPS
601: SFRLTPNFSL YPQFMFYLRR SQFLDVFNNS PDETGFFRLM LNREGVVNSI IMIQPTLLRY SFDGPPVPVL LDIRSVTPDV ILLFDSYFYV VIHHGSKIAQ
701: WRKLEYHKDP SHETFRNLLE APEIDAAQLV TDRIPMPRIV RCDQHGSQAR FLLAKLNPSV TQKTDHTGGS DIVLTDDMSL QDFLEDLQSL AVKG

Arabidopsis Description

At5g43670 [Source:UniProtKB/TrEMBL;Acc:Q84WI4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.