Factsheet for GSMUA_Achr4P11150_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
endoplasmic reticulum 1
cytosol 2
plastid 1
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P08270_001
GSMUA_Achr4P15460_001
GSMUA_Achr6P14800_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43670.1	GSMUA_Achr4P08270_001	AT3G16310.1	21798944
AT5G43670.1	GSMUA_Achr4P15460_001	AT3G16310.1	21798944
AT5G43670.1	GSMUA_Achr6P14800_001	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034845	Potato	cytosol	30.61	48.78
Bra033691.1-P	Field mustard	cytosol	46.43	24.59
CDY22339	Canola	cytosol	45.66	24.19
Os03t0742800-02	Rice	cytosol	46.43	24.04
CDX94717	Canola	cytosol	45.92	23.94
TraesCS5D01G391900.1	Wheat	cytosol	45.92	23.94
EER93475	Sorghum	cytosol	45.92	23.9
Zm00001d013301_P002	Maize	cytosol	45.92	23.9
TraesCS5B01G386700.1	Wheat	cytosol	45.66	23.8
GSMUA_AchrUn_...	Banana	cytosol	32.91	23.71
Solyc03g005380.2.1	Tomato	cytosol, golgi, plasma membrane	46.94	23.65
TraesCS5A01G382500.2	Wheat	cytosol	45.15	23.54
Zm00001d033975_P002	Maize	cytosol	46.17	23.09
AT5G43670.1	Thale cress	cytosol	46.17	22.8
KRG97332	Soybean	cytosol	38.52	20.68
VIT_05s0020g04710.t01	Wine grape	plasma membrane	49.49	17.12
GSMUA_Achr8P33210_001	Banana	cytosol	29.08	15.55
GSMUA_Achr1P25630_001	Banana	plastid	26.79	14.23
GSMUA_Achr9P30270_001	Banana	plastid	24.49	13.62
HORVU5Hr1G094210.8	Barley	cytosol, plastid	25.51	13.33
GSMUA_Achr10P...	Banana	cytosol, golgi, plastid	20.15	12.08
GSMUA_Achr11P...	Banana	plastid	10.71	4.88
GSMUA_Achr6P20530_001	Banana	plastid	10.46	4.7
GSMUA_Achr4P11140_001	Banana	cytosol	2.3	3.27
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	1.02	2.23
GSMUA_Achr6P19740_001	Banana	cytosol, plastid	0.0	0.0
GSMUA_Achr11P...	Banana	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.30.30.380	Gene3D:2.60.40.1670	Gene3D:3.40.50.410	MapMan:35.2	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886
GO:GO:0006888	GO:GO:0008150	GO:GO:0008270	GO:GO:0016020	GO:GO:0030127	EnsemblPlantsGene:GSMUA_Achr4G11150_001
EnsemblPlants:GSMUA_Achr4P11150_001	EnsemblPlants:GSMUA_Achr4T11150_001	InterPro:IPR036465	UniProt:M0SMY0	PFAM:PF04810	PFAM:PF04811
PANTHER:PTHR11141	PANTHER:PTHR11141:SF4	SUPFAM:SSF53300	SUPFAM:SSF81995	SUPFAM:SSF82919	InterPro:Sec23
InterPro:Sec23/24_trunk_dom	UniParc:UPI0002968F34	InterPro:Znf_Sec23_Sec24	InterPro:Znf_Sec23_Sec24_sf	SEG:seg	InterPro:vWFA_dom_sf

Description

Putative Protein transport protein sec23 [Source:GMGC_GENE;Acc:GSMUA_Achr4G11150_001]

Coordinates

chr4:-:8008702..8013344

Molecular Weight (calculated)

42987.7 Da

IEP (calculated)

6.429

GRAVY (calculated)

-0.004

Length

392 amino acids

Sequence
(BLAST)

001: MDFAELEAIE GLRWPWNAWP PSRSDAAALV VPLSVMCSPL MPLPDLPVLP YEPLLCASCR AALNPYARVD YRSALWTCPF CSHKNPFPRT YAGIGENNLP
101: AELFPTYSTV EYALARNPRP NPGPRLDASR VLEPAFVFVV DVCSEQEELR ALKNEILHVV AQLPENTMVG LISFGSMVWV HDLGYTDCPK VMVFCGDREL
201: TSEKWLRFMV TGSSLGERTS TGGTLLHLSV RSIELGTARY VPYRQLIGTP VRYGVQNLDL NIPLVLLQTV VSNHSKLGMA QSIQKHGFLL PVSECEFNFT
301: SWVEELNSTH NALPGHRPSR ATGAAISTAV ALLEVCSVNA GGRVMVFTSG PATIGPGMIA ETDLSKSIRT HRDLVNGNAP FTDRAHCDHQ GS

Best Arabidopsis Sequence Match ( AT1G05520.1 )
(BLAST)

001: MSEMASMDPE GIDGVRMTWN VWPRTKVEAS KCVIPVAACI SPIRYHRDIP SVEYAPLRCR ICTAALNPFA RVDFLAKIWI CPICFQRNHF PPHYHVMSET
101: NVPCELYPQY TTVEYTLPNP SQPTGVGNFD QTGAVSGQPS PSVFVFVLDT CMIEEEFGYA KSALKQAIGL LPENALVGFV SFGTQAHVHE LGFSDLTKVY
201: VFRGDKEISK DQVLEQLGLG ASGRRNPVGG FPMGRDNSAN FGYSGVNRFL LPASDCEFTI DLLLEELQTD QWPVQAGRRQ SRCTGVAISV ATGLLGACFP
301: GTGARIVALI GGPCSEGPGT IVSKDLSEPL RSHKDLDKDA APFYKKAEKF YDALANQLVN QGHVLDLFAS ALDQVGVAEM KAAVERTGGL VVLSESFGHS
401: VFKDSFKRVF EDGEESLGLC FNGTLEICCS KDIKIQGIIG PCASLQKKGP SVADTVIGEG NTTQWKMCGL DKRTCLTVFF DLSSSDQSSA PGGVNNQLYL
501: QFMTSYQNSK GKTLQRVTTV TRQWVDTGLS TEELVQGFDQ ETAAVVVARL ASLKMETEEG FDATRWLDRN LIRLCSKFGD YRKDDPASFT LNPNFSLFPQ
601: FTFNLRRSQF VQVFNNSPDE TAYNRMLLNR ENISNAAVMI QPSLTTYSFN SLPQPALLDV ASIGADRILL LDSYISVVVF HGMTIAQWRN LGYQNQPEHQ
701: AFAQLLEAPQ EDAQMIIRDR FPVPRLVVCD QHGSQARFLL AKLNPSATYN NASEMNAGSD IIFTDDVSLQ VFFQHLQKLA VQS

Arabidopsis Description

At1g05520/T25N20_16 [Source:UniProtKB/TrEMBL;Acc:Q8H0S3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.