Factsheet for Zm00001d013301_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008871_P001
Zm00001d010783_P001
Zm00001d038803_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43670.1	Zm00001d008871_P001	AT3G16310.1	21798944
AT5G43670.1	Zm00001d010783_P001	AT3G16310.1	21798944
AT5G43670.1	Zm00001d038803_P001	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93475	Sorghum	cytosol	97.48	97.48
Zm00001d033975_P002	Maize	cytosol	94.56	90.82
Os03t0742800-02	Rice	cytosol	89.24	88.77
TraesCS5D01G391900.1	Wheat	cytosol	87.12	87.23
TraesCS5A01G382500.2	Wheat	cytosol	86.99	87.1
TraesCS5B01G386700.1	Wheat	cytosol	86.32	86.44
GSMUA_Achr4P11140_001	Banana	cytosol	29.88	81.82
HORVU5Hr1G094210.8	Barley	cytosol, plastid	69.99	70.27
KRG97332	Soybean	cytosol	58.96	60.82
Bra033691.1-P	Field mustard	cytosol	59.76	60.81
CDY22339	Canola	cytosol	59.63	60.68
Solyc03g005380.2.1	Tomato	cytosol, golgi, plasma membrane	61.22	59.25
CDX94717	Canola	cytosol	58.96	59.04
AT5G43670.1	Thale cress	cytosol	59.76	56.68
GSMUA_Achr4P11150_001	Banana	cytosol	23.9	45.92
Zm00001d005902_P001	Maize	cytosol	44.89	44.36
VIT_05s0020g04710.t01	Wine grape	plasma membrane	64.54	42.9
Zm00001d049155_P004	Maize	plastid	44.89	42.73
PGSC0003DMT400034845	Potato	cytosol	13.41	41.06
Zm00001d004640_P001	Maize	cytosol, plastid	25.23	37.77
Zm00001d004639_P001	Maize	plastid	18.73	33.98
Zm00001d009150_P002	Maize	plastid	16.33	14.2

Protein Annotations

Gene3D:1.20.120.730	EntrezGene:103625891	Gene3D:2.30.30.380	Gene3D:2.60.40.1670	MapMan:22.4.1.3.1	Gene3D:3.40.20.10
Gene3D:3.40.50.410	UniProt:A0A1D6GHW7	InterPro:ADF-H/Gelsolin-like_dom_sf	ProteinID:AQK63049.1	ProteinID:AQK63051.1	ProteinID:AQK63052.1
ProteinID:AQK63054.1	GO:GO:0000139	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0006886	GO:GO:0006888
GO:GO:0008150	GO:GO:0008270	GO:GO:0009987	GO:GO:0015031	GO:GO:0016020	GO:GO:0016043
GO:GO:0030127	GO:GO:0090114	InterPro:Gelsolin-like_dom	InterPro:Gelsolin-like_dom_sf	InterPro:IPR029006	InterPro:IPR036465
PFAM:PF00626	PFAM:PF04810	PFAM:PF04811	PFAM:PF04815	PFAM:PF08033	PANTHER:PTHR11141
PANTHER:PTHR11141:SF4	SUPFAM:SSF53300	SUPFAM:SSF81811	SUPFAM:SSF81995	SUPFAM:SSF82754	SUPFAM:SSF82919
InterPro:Sec23	InterPro:Sec23/24_helical_dom	InterPro:Sec23/24_helical_dom_sf	InterPro:Sec23/24_trunk_dom	InterPro:Sec23_24_beta_S	InterPro:Sec23_C
UniParc:UPI0002217941	EnsemblPlantsGene:Zm00001d013301	EnsemblPlants:Zm00001d013301_P002	EnsemblPlants:Zm00001d013301_T002	InterPro:Znf_Sec23_Sec24	InterPro:Znf_Sec23_Sec24_sf
SEG:seg	InterPro:vWFA_dom_sf	:	:	:	:

Description

Sec23/Sec24 protein transport family protein

Coordinates

chr5:-:8064946..8072039

Molecular Weight (calculated)

83095.8 Da

IEP (calculated)

7.222

GRAVY (calculated)

-0.046

Length

753 amino acids

Sequence
(BLAST)

001: MDFAELEAVE GLRWPWHSWP PTAPAAASLV VPTAVLCSPL QHPTAPDLLP LLPYAPLRCA SPGCGAALNP FSRVHHGSAR WSCPFCGATG NPFPRLLAPD
101: ALPAELFPTH SSVEYSLPPD PAEAGGPGPP ALVFVIDAAT AAEELAVLKD EVRRVVQGLP EGIRVALVTF AASVWVHDLG FEGCARVVVL NGERELESDK
201: IQKLLGVHRS PYKKLAMPRS TEAQRFLLPV SECEFNITSA IEDLSSMSAC PRGHRPLRAT GAAISTAIAL LEGCCSPSTG GRIMVFTSGP ATVGPGCVVE
301: TDLGKAIRSH RDIFNSNAPL TDKARDFYKK VAKRLTDHAL VLDLFACSLD QVGAAELRNP IEVSGGLMVH TESFESEQFK SCFRHMFKRE GANNLNMNFN
401: ATIEIVTSKE VKICGALGPC ISLRRKNSSV SDKEIGEGGT NYWKTSSLSS KTNIAFFFRV DCSRKAEPPT VFFIQFMTRY RAGDGSYRLR VTTVARRWAA
501: PRSPEIAAGF DQEAAAAVMA RLAVYRAETY HVRDVIRWLD KMLIRFTAKF GNYVSEDPST FRLSTNFSLY PQFMYYLRRS QFIDVFNSSP DETAFFRLML
601: NREGVVGSLI MIQPTLFQYS FDGPPIPVLL DVSSISPDVI LLFDSYFYIV IHYGSKIAQW RKLGYHKDPN HENLRKLLEA PEVDAEALLV DRFPVPKLIK
701: CDQHGSQARF LLARLNPSVT QKTQLSEGSE VIFTDDVSLQ VFIEHLQELA VQG

Best Arabidopsis Sequence Match ( AT5G43670.1 )
(BLAST)

001: MDFLELEAIE GLRWSWNSWP TTKSDCESLV VPLSIMYTPL MHFSELPTIP YDPLICSRCG AVLNPYARVD YQSRIWSCPF CFHKNLFPRS YSGITETNLP
101: AELFPTYSAV EYSPLPSRQS GSNTTTPTAA ASWSNGFNQG VRSMPSNSSF SSLASSTVGG GGGVISELGP AFVFVVDASM VEDELRAVRS DVLFVIEQLP
201: ENCLVALITF DSMVRVYDLG FSECSKVVVF HGERDLSPDQ IQQFLGLGYS KQFHHGKMSA IRKQSFLLPL VECEFNLTSA FEEIIPLVDV KPGHRPHRST
301: GAAISTALGL LEGCSVTTGS RIMVFTSGPA TRGPGIIVDS DLSNSIRTHR DIITGHVSYY DKSCGFYKKL AKRLCDSSVV LDVFACSLDQ VGAAELRYAV
401: EMSGGFLLLG ETFESEQFKK CLRHIFIRDA DGNLSMYFDV SLEVVTTKDM RICGALGPVV SLRQKNDIVS ETEIGEGGTY MWKTSTVTNK TCVSFFFHVS
501: NEQNRKPQPG SAFFIQFITR YRYGNGAMRK RVTTVARRWV AGKSPEISSS FDQETAASVM ARLAINRAEE CHARDVITWL DNGLIRFASR FGDYIQEDPS
601: SFRLTPNFSL YPQFMFYLRR SQFLDVFNNS PDETGFFRLM LNREGVVNSI IMIQPTLLRY SFDGPPVPVL LDIRSVTPDV ILLFDSYFYV VIHHGSKIAQ
701: WRKLEYHKDP SHETFRNLLE APEIDAAQLV TDRIPMPRIV RCDQHGSQAR FLLAKLNPSV TQKTDHTGGS DIVLTDDMSL QDFLEDLQSL AVKG

Arabidopsis Description

At5g43670 [Source:UniProtKB/TrEMBL;Acc:Q84WI4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.