Factsheet for TraesCS5D01G391900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G340600.1
TraesCS1D01G342600.1
TraesCS3A01G274800.1
TraesCS3A01G313000.1
TraesCS3B01G158900.1
TraesCS3B01G308400.1
TraesCS3D01G141300.1
TraesCS3D01G274500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43670.1	TraesCS1A01G340600.1	AT3G16310.1	21798944
AT5G43670.1	TraesCS1D01G342600.1	AT3G16310.1	21798944
AT5G43670.1	TraesCS3A01G274800.1	AT3G16310.1	21798944
AT5G43670.1	TraesCS3A01G313000.1	AT3G16310.1	21798944
AT5G43670.1	TraesCS3B01G158900.1	AT3G16310.1	21798944
AT5G43670.1	TraesCS3B01G308400.1	AT3G16310.1	21798944
AT5G43670.1	TraesCS3D01G141300.1	AT3G16310.1	21798944
AT5G43670.1	TraesCS3D01G274500.1	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G382500.2	Wheat	cytosol	97.87	97.87
TraesCS5B01G386700.1	Wheat	cytosol	96.94	96.94
EER93475	Sorghum	cytosol	87.37	87.25
Zm00001d013301_P002	Maize	cytosol	87.23	87.12
Os03t0742800-02	Rice	cytosol	86.84	86.26
GSMUA_Achr4P11140_001	Banana	cytosol	30.19	82.55
Zm00001d033975_P002	Maize	cytosol	84.84	81.38
HORVU5Hr1G094210.8	Barley	cytosol, plastid	76.06	76.27
KRG97332	Soybean	cytosol	59.31	61.1
Bra033691.1-P	Field mustard	cytosol	59.44	60.41
Solyc03g005380.2.1	Tomato	cytosol, golgi, plasma membrane	62.1	60.03
CDY22339	Canola	cytosol	58.91	59.86
CDX94717	Canola	cytosol	58.64	58.64
AT5G43670.1	Thale cress	cytosol	59.57	56.42
GSMUA_Achr4P11150_001	Banana	cytosol	23.94	45.92
TraesCS4D01G083800.1	Wheat	cytosol	40.82	42.88
VIT_05s0020g04710.t01	Wine grape	plasma membrane	64.23	42.63
PGSC0003DMT400034845	Potato	cytosol	13.83	42.28
TraesCS4D01G151400.1	Wheat	golgi	43.09	41.43
TraesCS5D01G247600.1	Wheat	cytosol, plastid	43.48	35.62
TraesCS3D01G198500.1	Wheat	plastid	15.69	13.95

Protein Annotations

Gene3D:1.20.120.730	Gene3D:2.30.30.380	Gene3D:2.60.40.1670	MapMan:22.4.1.3.1	Gene3D:3.40.20.10	Gene3D:3.40.50.410
InterPro:ADF-H/Gelsolin-like_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0006888	GO:GO:0008150	GO:GO:0008270
GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0030127	GO:GO:0090114	InterPro:Gelsolin-like_dom
InterPro:Gelsolin-like_dom_sf	InterPro:IPR029006	InterPro:IPR036465	PFAM:PF00626	PFAM:PF04810	PFAM:PF04811
PFAM:PF04815	PFAM:PF08033	PANTHER:PTHR11141	PANTHER:PTHR11141:SF4	SUPFAM:SSF53300	SUPFAM:SSF81811
SUPFAM:SSF81995	SUPFAM:SSF82754	SUPFAM:SSF82919	InterPro:Sec23	InterPro:Sec23/24_helical_dom	InterPro:Sec23/24_helical_dom_sf
InterPro:Sec23/24_trunk_dom	InterPro:Sec23_24_beta_S	InterPro:Sec23_C	EnsemblPlantsGene:TraesCS5D01G391900	EnsemblPlants:TraesCS5D01G391900.1	InterPro:Znf_Sec23_Sec24
InterPro:Znf_Sec23_Sec24_sf	TIGR:cd11287	SEG:seg	InterPro:vWFA_dom_sf	:	:

Description

No Description!

Coordinates

chr5D:+:460389163..460392411

Molecular Weight (calculated)

83119.8 Da

IEP (calculated)

6.548

GRAVY (calculated)

-0.032

Length

752 amino acids

Sequence
(BLAST)

001: MDFAELEAVE GLRWPWHSWP PTPSAAEALV VPTAVLCTPL HPTAPDLLPI LPYPPLRCAS PACAAALNPF SRVHHASARW SCSFCGSMAN PYPRHISPDS
101: IPAELFPTHS SVEYTLPPDP AEVGGGAPPA IVFVVDAATA GDELAALKAE LLRVVQGLPE GVRVALVTFS ASVWVHDLGF EGCARVVVFN GERELESDKI
201: QQLLGVRHSR YNKLATLKPI EAQRFLLPVS ECEFSITSAI EDLSSMSACP RGHRPLRATG AAISTAVALL EGCCSPNTGG RIMVFTSGPM TVGPGLVVET
301: DLGKAIRSHR DIFNGNVPLV EKAQDFYKKV AKRLTDSALV LDLLACSLDQ IGAAELRYPV EVSGGLMVLT ESFESEQFKS CLRQTFKREG TDYLNMNFNA
401: TIEVVTSKEV KICGALGPCI SLHRQNSSVS DKEIGEGGTN YWRMSTLNSK TCIAFFFRAD CRRDTDPPTV FFIQFMTRYR HGDGSNRLRV TTVARRWAGP
501: RSPEIAAGFD QEAAAAVMAR LAVHRAETYH VRDVIRWLDK MLIRFTAKFG NYVPEDPSTF RLSTNFSLYP QFMYYLRRSQ FIDVGNSSPD ETAFFRLMLN
601: REGVVGSLIM IQPTLFQYSF DGPPIPVLLD VSSISPDVIL LFDSYFYIVI HYGSKIAQWR KLGYHKDPNH ENLRKLLEAP EVDAEALLAD RFPVPKLIKC
701: DQHGSQARFL LARLNPSVTQ KSQLSEGSEV IFTDDVCLQV FIEHLQELAV QG

Best Arabidopsis Sequence Match ( AT5G43670.1 )
(BLAST)

001: MDFLELEAIE GLRWSWNSWP TTKSDCESLV VPLSIMYTPL MHFSELPTIP YDPLICSRCG AVLNPYARVD YQSRIWSCPF CFHKNLFPRS YSGITETNLP
101: AELFPTYSAV EYSPLPSRQS GSNTTTPTAA ASWSNGFNQG VRSMPSNSSF SSLASSTVGG GGGVISELGP AFVFVVDASM VEDELRAVRS DVLFVIEQLP
201: ENCLVALITF DSMVRVYDLG FSECSKVVVF HGERDLSPDQ IQQFLGLGYS KQFHHGKMSA IRKQSFLLPL VECEFNLTSA FEEIIPLVDV KPGHRPHRST
301: GAAISTALGL LEGCSVTTGS RIMVFTSGPA TRGPGIIVDS DLSNSIRTHR DIITGHVSYY DKSCGFYKKL AKRLCDSSVV LDVFACSLDQ VGAAELRYAV
401: EMSGGFLLLG ETFESEQFKK CLRHIFIRDA DGNLSMYFDV SLEVVTTKDM RICGALGPVV SLRQKNDIVS ETEIGEGGTY MWKTSTVTNK TCVSFFFHVS
501: NEQNRKPQPG SAFFIQFITR YRYGNGAMRK RVTTVARRWV AGKSPEISSS FDQETAASVM ARLAINRAEE CHARDVITWL DNGLIRFASR FGDYIQEDPS
601: SFRLTPNFSL YPQFMFYLRR SQFLDVFNNS PDETGFFRLM LNREGVVNSI IMIQPTLLRY SFDGPPVPVL LDIRSVTPDV ILLFDSYFYV VIHHGSKIAQ
701: WRKLEYHKDP SHETFRNLLE APEIDAAQLV TDRIPMPRIV RCDQHGSQAR FLLAKLNPSV TQKTDHTGGS DIVLTDDMSL QDFLEDLQSL AVKG

Arabidopsis Description

At5g43670 [Source:UniProtKB/TrEMBL;Acc:Q84WI4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.