Factsheet for GSMUA_Achr4P11140_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
endoplasmic reticulum 2
extracellular 2
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	endoplasmic reticulum
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P08270_001
GSMUA_Achr4P15460_001
GSMUA_Achr6P14800_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43670.1	GSMUA_Achr4P08270_001	AT3G16310.1	21798944
AT5G43670.1	GSMUA_Achr4P15460_001	AT3G16310.1	21798944
AT5G43670.1	GSMUA_Achr6P14800_001	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	30.91	47.49
TraesCS5D01G391900.1	Wheat	cytosol	82.55	30.19
TraesCS5A01G382500.2	Wheat	cytosol	82.55	30.19
Os03t0742800-02	Rice	cytosol	82.55	29.99
TraesCS5B01G386700.1	Wheat	cytosol	81.82	29.92
Zm00001d013301_P002	Maize	cytosol	81.82	29.88
EER93475	Sorghum	cytosol	81.82	29.88
HORVU5Hr1G094210.8	Barley	cytosol, plastid	81.09	29.73
Zm00001d033975_P002	Maize	cytosol	81.82	28.7
KRG97332	Soybean	cytosol	73.45	27.67
Solyc03g005380.2.1	Tomato	cytosol, golgi, plasma membrane	71.64	25.32
GSMUA_Achr6P19740_001	Banana	cytosol, plastid	7.64	25.3
Bra033691.1-P	Field mustard	cytosol	65.82	24.46
CDY22339	Canola	cytosol	65.82	24.46
CDX94717	Canola	cytosol	66.18	24.2
AT5G43670.1	Thale cress	cytosol	68.0	23.55
GSMUA_Achr10P...	Banana	cytosol, golgi, plastid	52.73	22.17
GSMUA_Achr9P30270_001	Banana	plastid	52.73	20.57
GSMUA_Achr8P33210_001	Banana	cytosol	53.09	19.92
GSMUA_Achr1P25630_001	Banana	plastid	52.73	19.65
VIT_05s0020g04710.t01	Wine grape	plasma membrane	73.45	17.83
GSMUA_Achr11P...	Banana	cytosol	9.82	12.33
GSMUA_AchrUn_...	Banana	cytosol	13.82	6.99
GSMUA_Achr11P...	Banana	plastid	20.0	6.39
GSMUA_Achr6P20530_001	Banana	plastid	20.0	6.31
GSMUA_Achr4P11150_001	Banana	cytosol	3.27	2.3
PGSC0003DMT400034845	Potato	cytosol	1.82	2.03

Protein Annotations

Gene3D:1.20.120.730	Gene3D:2.60.40.1670	MapMan:22.4.1.3.1	Gene3D:3.40.20.10	InterPro:ADF-H/Gelsolin-like_dom_sf	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0006888
GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0030127	EnsemblPlantsGene:GSMUA_Achr4G11140_001	EnsemblPlants:GSMUA_Achr4P11140_001
EnsemblPlants:GSMUA_Achr4T11140_001	InterPro:Gelsolin-like_dom_sf	InterPro:IPR029006	UniProt:M0SMX9	PFAM:PF04815	PFAM:PF08033
PANTHER:PTHR11141	PANTHER:PTHR11141:SF4	SUPFAM:SSF81811	SUPFAM:SSF81995	SUPFAM:SSF82754	InterPro:Sec23
InterPro:Sec23/24_helical_dom	InterPro:Sec23/24_helical_dom_sf	InterPro:Sec23_24_beta_S	UniParc:UPI00029595B4	SEG:seg	:

Description

Putative Protein transport protein SEC23 [Source:GMGC_GENE;Acc:GSMUA_Achr4G11140_001]

Coordinates

chr4:-:8007381..8008592

Molecular Weight (calculated)

31494.9 Da

IEP (calculated)

7.215

GRAVY (calculated)

-0.159

Length

275 amino acids

Sequence
(BLAST)

001: MSKTCIAFIF QVSTDNVEPP PVLFIQFMTR YRHGNGGFRL RVTTAARRWV KPHSPELTAG FDQEAAAAVM ARLAVHRAEE YHARDVIRWL DKMLIRFTAK
101: FGDYVPEDPS TFRLSSNFSL FPQFIYYLRR SQFIDVFNST PDETAFFRLM LNREGVVGSL IMIQPTLFQY SFDGPPIPIA QWRKLGYDKD PNHENLRKLL
201: EAPEIDAEAL IADRIPVPKL VKCDQHGSQA RFLLARLNPS VTQKTLLTDG SEVIFTDDVS LQVFIEHLQE LAVQG

Best Arabidopsis Sequence Match ( AT1G05520.1 )
(BLAST)

001: MSEMASMDPE GIDGVRMTWN VWPRTKVEAS KCVIPVAACI SPIRYHRDIP SVEYAPLRCR ICTAALNPFA RVDFLAKIWI CPICFQRNHF PPHYHVMSET
101: NVPCELYPQY TTVEYTLPNP SQPTGVGNFD QTGAVSGQPS PSVFVFVLDT CMIEEEFGYA KSALKQAIGL LPENALVGFV SFGTQAHVHE LGFSDLTKVY
201: VFRGDKEISK DQVLEQLGLG ASGRRNPVGG FPMGRDNSAN FGYSGVNRFL LPASDCEFTI DLLLEELQTD QWPVQAGRRQ SRCTGVAISV ATGLLGACFP
301: GTGARIVALI GGPCSEGPGT IVSKDLSEPL RSHKDLDKDA APFYKKAEKF YDALANQLVN QGHVLDLFAS ALDQVGVAEM KAAVERTGGL VVLSESFGHS
401: VFKDSFKRVF EDGEESLGLC FNGTLEICCS KDIKIQGIIG PCASLQKKGP SVADTVIGEG NTTQWKMCGL DKRTCLTVFF DLSSSDQSSA PGGVNNQLYL
501: QFMTSYQNSK GKTLQRVTTV TRQWVDTGLS TEELVQGFDQ ETAAVVVARL ASLKMETEEG FDATRWLDRN LIRLCSKFGD YRKDDPASFT LNPNFSLFPQ
601: FTFNLRRSQF VQVFNNSPDE TAYNRMLLNR ENISNAAVMI QPSLTTYSFN SLPQPALLDV ASIGADRILL LDSYISVVVF HGMTIAQWRN LGYQNQPEHQ
701: AFAQLLEAPQ EDAQMIIRDR FPVPRLVVCD QHGSQARFLL AKLNPSATYN NASEMNAGSD IIFTDDVSLQ VFFQHLQKLA VQS

Arabidopsis Description

At1g05520/T25N20_16 [Source:UniProtKB/TrEMBL;Acc:Q8H0S3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.