Factsheet for GSMUA_Achr8P33210_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
endoplasmic reticulum 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P25630_001	Banana	plastid	83.63	83.06
Os11t0433500-01	Rice	cytosol, plasma membrane	39.56	82.62
GSMUA_Achr10P...	Banana	cytosol, golgi, plastid	71.21	79.82
GSMUA_Achr9P30270_001	Banana	plastid	76.4	79.43
GSMUA_Achr11P...	Banana	cytosol	22.37	74.89
VIT_05s0062g00130.t01	Wine grape	cytosol	77.76	73.93
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	17.87	73.18
OQU83385	Sorghum	cytosol, plastid	77.76	71.88
TraesCS4D01G151400.1	Wheat	golgi	76.67	71.87
TraesCS4B01G163100.3	Wheat	plastid	76.67	71.87
Zm00001d049155_P004	Maize	plastid	77.49	71.81
TraesCS4A01G151800.3	Wheat	cytosol, plastid	76.53	71.37
GSMUA_Achr6P19740_001	Banana	cytosol, plastid	8.05	71.08
KRG97365	Soybean	cytosol, endoplasmic reticulum, nucleus	73.81	70.63
KRH31551	Soybean	endoplasmic reticulum	73.67	70.4
Bra032766.1-P	Field mustard	cytosol	72.31	68.65
CDY12738	Canola	cytosol	68.76	68.48
Solyc05g053830.2.1	Tomato	cytosol, nucleus, plastid	73.12	68.37
PGSC0003DMT400040714	Potato	cytosol	72.99	68.24
CDY12077	Canola	cytosol	68.49	68.11
Bra030613.1-P	Field mustard	cytosol	71.21	68.06
CDY15544	Canola	cytosol	71.21	68.06
CDX86574	Canola	cytosol	71.08	67.93
CDX90271	Canola	cytosol	68.21	67.75
Bra010748.1-P	Field mustard	cytosol	67.94	67.48
HORVU4Hr1G041690.2	Barley	cytosol, nucleus	76.26	67.43
PGSC0003DMT400080958	Potato	cytosol	70.12	67.28
Solyc09g092680.2.1	Tomato	cytosol	69.71	66.71
CDY01197	Canola	cytosol	68.76	66.14
AT4G14160.1	Thale cress	cytosol	69.71	66.11
AT1G05520.1	Thale cress	cytosol	70.53	66.03
AT3G23660.2	Thale cress	cytosol	70.67	65.49
Zm00001d004639_P001	Maize	plastid	31.92	56.39
GSMUA_AchrUn_...	Banana	cytosol	41.75	56.25
Zm00001d004640_P001	Maize	cytosol, plastid	37.93	55.27
CDY12241	Canola	cytosol	45.43	54.77
GSMUA_Achr4P11140_001	Banana	cytosol	19.92	53.09
GSMUA_Achr4P11150_001	Banana	cytosol	15.55	29.08
CDY64015	Canola	cytosol	4.5	23.74
Bra021056.1-P	Field mustard	cytosol, nucleus, plastid	5.87	19.28
GSMUA_Achr11P...	Banana	plastid	16.64	14.17
GSMUA_Achr6P20530_001	Banana	plastid	16.1	13.53

Protein Annotations

Gene3D:1.20.120.730	Gene3D:2.30.30.380	Gene3D:2.60.40.1670	MapMan:22.4.1.3.1	Gene3D:3.40.20.10	Gene3D:3.40.50.410
InterPro:ADF-H/Gelsolin-like_dom_sf	GO:GO:0000139	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0006886	GO:GO:0006888
GO:GO:0008150	GO:GO:0008270	GO:GO:0009987	GO:GO:0015031	GO:GO:0016020	GO:GO:0016043
GO:GO:0030127	GO:GO:0090114	EnsemblPlantsGene:GSMUA_Achr8G33210_001	EnsemblPlants:GSMUA_Achr8P33210_001	EnsemblPlants:GSMUA_Achr8T33210_001	InterPro:Gelsolin-like_dom
InterPro:Gelsolin-like_dom_sf	InterPro:IPR029006	InterPro:IPR036465	UniProt:M0TVS3	PFAM:PF00626	PFAM:PF04810
PFAM:PF04811	PFAM:PF04815	PFAM:PF08033	PANTHER:PTHR11141	PANTHER:PTHR11141:SF2	SUPFAM:SSF53300
SUPFAM:SSF81811	SUPFAM:SSF81995	SUPFAM:SSF82754	SUPFAM:SSF82919	InterPro:Sec23	InterPro:Sec23/24_helical_dom
InterPro:Sec23/24_helical_dom_sf	InterPro:Sec23/24_trunk_dom	InterPro:Sec23_24_beta_S	InterPro:Sec23_C	UniParc:UPI000296A8CE	InterPro:Znf_Sec23_Sec24
InterPro:Znf_Sec23_Sec24_sf	SEG:seg	InterPro:vWFA_dom_sf	:	:	:

Description

Putative Protein transport protein SEC23 [Source:GMGC_GENE;Acc:GSMUA_Achr8G33210_001]

Coordinates

chr8:-:34321749..34332325

Molecular Weight (calculated)

80563.7 Da

IEP (calculated)

5.983

GRAVY (calculated)

-0.018

Length

733 amino acids

Sequence
(BLAST)

001: MAEELVGTGG ATSDPDGPDG VRMSWNNWPR SKIEASKCVI PVAASITPIR ASPSVLVLPY QPLRCKPPCS AVLSPFARVD FAAKIWICPL CFSRNHFPPH
101: YAGISEANVP GELYPQCTTV EYAPPPLDHH SAPSSAPPPP PVFLFVIDTC LIEEELGFLK SAMRRAIGLL PDNALVGLLT FGTQAPQTNG FHPSGSVHRF
201: LLPAADCEYA LSSLLDELQT DQWPVEAGSR ALRCTGVALS VAAGLLGACV PGTGARIIAL VGGPCTQGPG MIVSKDLSEP VRSHKDLDKD AAPHFHKAVK
301: FYENLAKQLV SQGHVLDLFA SALDQVGVAE MKVSVERTGG LVVLAESFGH PVFKDSFKRI FENGQQSLGL SFNGTLEINC SKDIRIEGII GPCTSLEKKG
401: TLCADVVVGQ GNTTSWKMCG LDRTTCLTVF FEIVPSERSN QSGIPNPQLY IQFLTNYQGP EGQMRLRVTT ITRRWVDGSN AEELIEGFDQ ETAAVVLARY
501: VSLKMEMEEE FDATRWLDRS LIRLCSRFGD YRKDDPASFT LNPNFSILPQ FMFNLRRSQF VQVFNNSPDE TAYFRMLLNR ESITNSVVMI QPSLLSYSFN
601: SPPVPALLDV ASISSDRILL LDAYFSVVIF HGMTIAQWRN MGYQIQPEHQ AFAQLLQAPQ DDARVIIRDR FPVPRLVICD QHGSQARFLL AKLNPSATYN
701: SAHEVVPGSD VIFTDDVSLQ VFCEHLRRLV VQS

Best Arabidopsis Sequence Match ( AT3G23660.1 )
(BLAST)

001: MAETANTDLE GIDGVRMTWN VWPHSKAEAS KCVIPLAACI SPIRRHADIP TLPYAPLRCR TCSAALNAYA QVDFTAKLWI CPFCYQRNHF PPHYHVISET
101: NLPGELYPQY TTVEYTLPPP VANGEGLVDP PVFVFVLDTC MIEEELDFAK SALKQAIGLL PENALVGFVS FGTQAHVHEL GFSEMSKVFV FKGDKEISKD
201: QILDQLGLGG SSRRGGSKGP QNGFPSSGLN RFLLPASECE FTLNSLLDEL QSDQWPVKPG HRSQRCTGVA LSVAAGLLGA CLPGTGARIV ALIGGPCTEG
301: PGTIVSKDLS DPVRSHKDLD KDAAPYYKKA VKFYDSIAKQ LVTQGHVLDL FASALDQVGV AEMKVAVERT GGLVVLSESF GHSVFKDSFK RVFEDGDQAL
401: GLCFNGTLEI CCSQDIKIQG AIGPCSSLEK KGASVADTVI GEGNTSAWRL CGLDKTTCLT IFFDISSSGS NTPGAANPQF YLQFLTSYQN PEGQTLLRVT
501: TVCRQWIDSA VSSEELVQGF DQETAAVVMA RLASLKMESE EGFDATRWLD RNLIRLCSKF GDYRKDDPAS FTLNPYFSLF PQFIFNLRRS QFVQVFNNSP
601: DETAYFCMLL NRENISNATV MIQPSLTTYS FNSPAEPALL DVASIAADRI LLLDAYFSVV VFHGMTIAQW RNMGYHHQPE HQAFAELLQA PQEDSQMIVR
701: ERFPVPRLVV CDQHGSQARF LLAKLNPSAT YNNANEMSTG SDVIFTDDVS LQVFFEHLQK LVVQS

Arabidopsis Description

Sec23/Sec24 protein transport family protein [Source:UniProtKB/TrEMBL;Acc:F4J462]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.