Factsheet for Solyc05g053830.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 1
endoplasmic reticulum 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040714	Potato	cytosol	98.34	98.34
Solyc09g092680.2.1	Tomato	cytosol	83.8	85.77
VIT_05s0062g00130.t01	Wine grape	cytosol	78.83	80.16
KRH31551	Soybean	endoplasmic reticulum	77.68	79.4
KRG97365	Soybean	cytosol, endoplasmic reticulum, nucleus	77.55	79.37
Os11t0433500-01	Rice	cytosol, plasma membrane	34.57	77.21
GSMUA_Achr10P...	Banana	cytosol, golgi, plastid	63.78	76.45
Bra032766.1-P	Field mustard	cytosol	75.26	76.42
CDY12738	Canola	cytosol	71.56	76.22
CDX90271	Canola	cytosol	71.56	76.02
Bra030613.1-P	Field mustard	cytosol	74.23	75.88
CDY15544	Canola	cytosol	74.23	75.88
CDX86574	Canola	cytosol	74.11	75.75
Bra010748.1-P	Field mustard	cytosol	71.3	75.75
CDY12077	Canola	cytosol	71.05	75.58
AT4G14160.1	Thale cress	cytosol	72.83	73.87
AT3G23660.2	Thale cress	cytosol	74.23	73.58
AT1G05520.1	Thale cress	cytosol	73.47	73.56
CDY01197	Canola	cytosol	71.43	73.49
GSMUA_Achr8P33210_001	Banana	cytosol	68.37	73.12
GSMUA_Achr9P30270_001	Banana	plastid	65.69	73.05
GSMUA_Achr1P25630_001	Banana	plastid	67.86	72.09
Zm00001d049155_P004	Maize	plastid	70.92	70.29
TraesCS4D01G151400.1	Wheat	golgi	69.9	70.08
TraesCS4B01G163100.3	Wheat	plastid	69.9	70.08
OQU83385	Sorghum	cytosol, plastid	70.54	69.74
TraesCS4A01G151800.3	Wheat	cytosol, plastid	69.64	69.47
GSMUA_Achr11P...	Banana	cytosol	18.49	66.21
HORVU4Hr1G041690.2	Barley	cytosol, nucleus	69.39	65.62
Solyc01g081070.2.1	Tomato	cytosol, nucleus	61.1	62.7
CDY12241	Canola	cytosol	46.17	59.54
Zm00001d004639_P001	Maize	plastid	30.61	57.83
Zm00001d004640_P001	Maize	cytosol, plastid	35.59	55.47
Solyc03g005380.2.1	Tomato	cytosol, golgi, plasma membrane	42.86	43.19
Solyc11g056380.1.1	Tomato	cytosol	4.08	20.91
Solyc09g055810.1.1	Tomato	cytosol	1.79	17.72
Solyc02g021380.1.1	Tomato	plastid	1.53	14.81
Solyc01g080850.2.1	Tomato	plastid	15.69	14.06

Protein Annotations

Gene3D:1.20.120.730	Gene3D:2.30.30.380	Gene3D:2.60.40.1670	MapMan:22.4.1.3.1	Gene3D:3.40.20.10	Gene3D:3.40.50.410
InterPro:ADF-H/Gelsolin-like_dom_sf	GO:GO:0000139	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0006886	GO:GO:0006888
GO:GO:0008150	GO:GO:0008270	GO:GO:0009987	GO:GO:0015031	GO:GO:0016020	GO:GO:0016043
GO:GO:0030127	GO:GO:0090114	InterPro:Gelsolin-like_dom	InterPro:Gelsolin-like_dom_sf	InterPro:IPR029006	InterPro:IPR036465
UniProt:K4C263	PFAM:PF00626	PFAM:PF04810	PFAM:PF04811	PFAM:PF04815	PFAM:PF08033
PANTHER:PTHR11141	PANTHER:PTHR11141:SF2	SUPFAM:SSF53300	SUPFAM:SSF81811	SUPFAM:SSF81995	SUPFAM:SSF82754
SUPFAM:SSF82919	InterPro:Sec23	InterPro:Sec23/24_helical_dom	InterPro:Sec23/24_helical_dom_sf	InterPro:Sec23/24_trunk_dom	InterPro:Sec23_24_beta_S
InterPro:Sec23_C	EnsemblPlantsGene:Solyc05g053830.2	EnsemblPlants:Solyc05g053830.2.1	UniParc:UPI0002766706	InterPro:Znf_Sec23_Sec24	InterPro:Znf_Sec23_Sec24_sf
SEG:seg	InterPro:vWFA_dom_sf	:	:	:	:

Description

No Description!

Coordinates

chr5:-:63857975..63865620

Molecular Weight (calculated)

86278.0 Da

IEP (calculated)

5.409

GRAVY (calculated)

-0.091

Length

784 amino acids

Sequence
(BLAST)

001: MATEMAQPDA EGIDGVRMTW NAWPRTKVEA SKCVIPIASS IHLIRPHTDL PTLPYVPLRC KTCTAVLNPF ARVDFQALIW ICPFCFQRNH FPQHYSGISE
101: TNVPGELYPQ FTTIQYTLPS QTPQSFNPNP QNPLPESSVS PIYLFVLDTC MLEEELEFAK SALKRAIDML PDNAMVGFIS YGTQVQVHEL GFADMSKVYV
201: FRGSKELSKD QVLDQLGLGT AGGRRTGGAP GMQKGGGPTG VPNLGVARFL LPASECEYTL NSLLDELSTD QWPVPQGNRA LRCTGVALSV AAGLLGACVA
301: GTGARIMALV GGPCTEGPGT IVSKDLSEPV RSHKDLHKDA APFFKKAVHF YEELAKQLVS QGHVLDVFAS ALDQVGVAEM KVSIEKTGGL VVLAESFGHS
401: VFKDSFKQIF EDGEQSLGLS FNGTLEINCS KDIKIQGIIG PCTSLDKKGP AVSSTVTGEG NTTAWKLCGL DKNTCLTVFF DVSSSEKSDP SGNVNPQLYI
501: QFLTSYQSPD GQTKLRVTTV TRRWVDAAVS NEELVQGFDQ ETAAVVVARL ASYKMEMEED FDATRWLDRN LIRLCSKFGD YRKDEPSSFT LNPSFSLFPQ
601: FMFHLRRSQF LQVFNNSPDE TAYFRMLLNR EGISNAAVMI QPTLTAFSFN SLPFPALLDV ASIAADRILL LDAYFSVVIF HGMTIAQWRN MGYQEQPEHQ
701: AFAQLLQVPH DEAQAIIRER FPVPRLVVCD QHGSQARFLL AKLNPSATYN NANEMAAGSD VIFTDDVSLQ VFFEHLQRLA VQSS

Best Arabidopsis Sequence Match ( AT3G23660.1 )
(BLAST)

001: MAETANTDLE GIDGVRMTWN VWPHSKAEAS KCVIPLAACI SPIRRHADIP TLPYAPLRCR TCSAALNAYA QVDFTAKLWI CPFCYQRNHF PPHYHVISET
101: NLPGELYPQY TTVEYTLPPP VANGEGLVDP PVFVFVLDTC MIEEELDFAK SALKQAIGLL PENALVGFVS FGTQAHVHEL GFSEMSKVFV FKGDKEISKD
201: QILDQLGLGG SSRRGGSKGP QNGFPSSGLN RFLLPASECE FTLNSLLDEL QSDQWPVKPG HRSQRCTGVA LSVAAGLLGA CLPGTGARIV ALIGGPCTEG
301: PGTIVSKDLS DPVRSHKDLD KDAAPYYKKA VKFYDSIAKQ LVTQGHVLDL FASALDQVGV AEMKVAVERT GGLVVLSESF GHSVFKDSFK RVFEDGDQAL
401: GLCFNGTLEI CCSQDIKIQG AIGPCSSLEK KGASVADTVI GEGNTSAWRL CGLDKTTCLT IFFDISSSGS NTPGAANPQF YLQFLTSYQN PEGQTLLRVT
501: TVCRQWIDSA VSSEELVQGF DQETAAVVMA RLASLKMESE EGFDATRWLD RNLIRLCSKF GDYRKDDPAS FTLNPYFSLF PQFIFNLRRS QFVQVFNNSP
601: DETAYFCMLL NRENISNATV MIQPSLTTYS FNSPAEPALL DVASIAADRI LLLDAYFSVV VFHGMTIAQW RNMGYHHQPE HQAFAELLQA PQEDSQMIVR
701: ERFPVPRLVV CDQHGSQARF LLAKLNPSAT YNNANEMSTG SDVIFTDDVS LQVFFEHLQK LVVQS

Arabidopsis Description

Sec23/Sec24 protein transport family protein [Source:UniProtKB/TrEMBL;Acc:F4J462]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.