Factsheet for Solyc01g080850.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g055810.1.1	Tomato	cytosol	7.43	82.28
VIT_07s0005g02630.t01	Wine grape	plastid	77.49	77.57
KRG96600	Soybean	nucleus	75.54	75.89
KRH68337	Soybean	nucleus	74.97	75.32
AT4G01810.2	Thale cress	plastid	74.06	73.64
CDY07119	Canola	plastid	72.57	72.65
CDY22008	Canola	plastid	72.57	72.65
GSMUA_Achr11P...	Banana	plastid	70.63	71.78
Bra036313.1-P	Field mustard	cytosol, plastid	72.8	71.73
HORVU3Hr1G044780.1	Barley	cytosol	59.66	71.02
GSMUA_Achr6P20530_001	Banana	plastid	70.29	70.53
Zm00001d009150_P002	Maize	plastid	66.06	66.74
TraesCS3A01G195200.1	Wheat	plastid	64.46	66.67
TraesCS3D01G198500.1	Wheat	plastid	64.34	66.55
EES02883	Sorghum	cytosol, plastid	65.71	66.24
TraesCS3B01G222900.1	Wheat	plastid	63.77	65.96
Os01t0321700-01	Rice	cytosol, plastid	60.34	65.27
Solyc02g021380.1.1	Tomato	plastid	5.71	61.73
Solyc11g056380.1.1	Tomato	cytosol	10.06	57.52
Solyc01g081070.2.1	Tomato	cytosol, nucleus	15.31	17.54
Solyc09g092680.2.1	Tomato	cytosol	13.83	15.8
Solyc05g053830.2.1	Tomato	cytosol, nucleus, plastid	14.06	15.69
Solyc03g005380.2.1	Tomato	cytosol, golgi, plasma membrane	13.6	15.3

Protein Annotations

Gene3D:1.20.120.730	Gene3D:2.30.30.380	Gene3D:3.40.20.10	Gene3D:3.40.50.410	MapMan:35.2	InterPro:ADF-H/Gelsolin-like_dom_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0006810	GO:GO:0006886	GO:GO:0006888	GO:GO:0008150	GO:GO:0008270
GO:GO:0015031	GO:GO:0016020	GO:GO:0030127	InterPro:Gelsolin-like_dom_sf	InterPro:IPR029006	InterPro:IPR036465
UniProt:K4AXX8	PFAM:PF04810	PFAM:PF04811	PFAM:PF04815	PFAM:PF08033	PANTHER:PTHR11141
PANTHER:PTHR11141:SF6	SUPFAM:SSF53300	SUPFAM:SSF81811	SUPFAM:SSF81995	SUPFAM:SSF82754	SUPFAM:SSF82919
InterPro:Sec23	InterPro:Sec23/24_helical_dom	InterPro:Sec23/24_helical_dom_sf	InterPro:Sec23/24_trunk_dom	InterPro:Sec23_24_beta_S	EnsemblPlantsGene:Solyc01g080850.2
EnsemblPlants:Solyc01g080850.2.1	UniParc:UPI000276276F	InterPro:Znf_Sec23_Sec24	InterPro:Znf_Sec23_Sec24_sf	SEG:seg	InterPro:vWFA_dom_sf

Description

No Description!

Coordinates

chr1:-:80143569..80149736

Molecular Weight (calculated)

95312.7 Da

IEP (calculated)

6.657

GRAVY (calculated)

-0.191

Length

875 amino acids

Sequence
(BLAST)

001: MAKRPESSVG YSVTIPTPQQ GTQSPRPDTV FSPPPFPSSS AGPIFPPPIV QPNQIPSPSI KTPNLPSPAN GVRTGSPAPH LSTPPGPPVF SSPLQPAAVP
101: FRTSPATPQP IAYSSASSLP TSSPPQFSNG SVELHHQISD VTEDWTPAAE SPNVLFSAHK VLKQKKLANI PSLGFGALVS SGREMSPGPQ MIQRDPHRCH
201: NCGAYANLYC NILPGSGQWQ CVICRNLNGS EGDYIASNKE ELRNVPELSL PSVDYVQTGN KRPGFFPVSD SRVSAPVVLV IDECLDEPHL QHFQSSLHAF
301: VDSLPPTTRL GIVTYGSTVS VYDFSEESIA SADVLPGNKS PDQESLKALI YGTGIYLSPM HASLPVAHSI FSSLRPYKLD IPEASRDRCL GTAVEVASAI
401: IQGPSAEMSQ GVVKRPGGNS RIIVCAGGPN TCGPGSVPHS FSHPNYAHME KIALKWMETL GREAFRKNTV IDILCAGTCP VRVPVLQPLA KASGGVLILH
501: DDFGEAFGVN LQRASGRAAG SHGLLEVRCS EDIFVSQVIG PGEEAHVDSN EVFKNDDALV IQMLSIEETQ SFALSMETKR DIKRDFVYFQ FAFKFSDVYQ
601: SDITRVISVR LPTVDSVSSY LQSIQDEVAA VLIAKRTLLR AKNANDALDM RATIDERIKD ITSKFGSQMP KSKLYQFPRE LLLLPEVLFH LRRGPLLGSI
701: LGHEDERSVL RNLFLNAAFD LSLRMVAPRC LMHRQGGTFE ELPAYNLAMQ SDAAVVLDHG TDVFIWLGAE LDAQEGKGAA ALAACRTLAE ELTEMRFPAP
801: RILAFKEGSS QARYFVSRLI PAHKDPPYEQ EARFPQLRTL TAEQRTKLKS SFLYFDDPSF CEWMRSLKVL PPEPS

Best Arabidopsis Sequence Match ( AT4G01810.3 )
(BLAST)

001: MANLPKSSVN YPGTLTPLEP NRPSPQPDRT PVPHSPPVVA SPIPPRFPQP SFRPDQMSSP SMKSPSLLSP ANGIRTGSPI PRLSTPPGPP VFNTPVKPAA
101: VPFRTSPATP QPMAYSSANS SLPVSTPSFY SNGSSVGSQR DLPDVVRMEE PIAADSPYVL FSANKVLKQK KLANVASLGF GAIVSAGREI SPGPQIIQRD
201: PHRCLNCGAY SNPYSSILIG SGQWQCVICE NMNGSKGEYV ASSKNELQNF PELSLPLVDY VQTGNKRPGF VPASDSRTSA PVVLVIDECL DEPHLQHLQS
301: SLHAFVDSLP QTTRLGIILY GRTVSIYDFS EDSVASADVI SGAKSPSAES MKALIYGTGV YLSPMHASLK VAHEIFSSLR PYTLNVPEAS RDRCLGTAVE
401: AALAIIQGPS AEMSRGVVRR AGGNSRIIVC AGGPITYGPG SVPHSMSHPN YPYMEKTAIK WMENLGREAH RHNTVVDILC AGTCPLRVPI LQPLAKASGG
501: VLVLHDDFGE AFGVDLQRAA TRAAGSHGLL EVRCSDDILI TQVIGPGEEA HSETHETFKS DAALSIQMLS VEETQSFSLS MENKRDIKSD HVFFQFAFHY
601: SDVYQADVSR VITFKLPTVD SISAYLQSVE DEASAVLISK RTLLLAKNQK DAVDMRATVD ERIKDIALKF GSQVPKSKLY SFPKELSSLP ELLFHLRRGP
701: LLGNIIGHED ERSVLRNLFL NASFDLSLRM VAPRCLMHQE GGTFEELPAY DLSMQSDKAV ILDHGTDVFI WLGAELSADE VKSAAVLAAC RTLAEELTEF
801: RFPAPRILAF KEGSSQARYF VCRLIPAHKD PPYEQEARFP QIRTLTTEQR MKLKSSFIEF DEASFCEWMR SLKVVPPEPR

Arabidopsis Description

Sec23/Sec24 protein transport family protein [Source:UniProtKB/TrEMBL;Acc:Q84WV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.