Factsheet for TraesCS3B01G222900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G198500.1	Wheat	plastid	98.35	98.35
TraesCS3A01G195200.1	Wheat	plastid	97.87	97.87
HORVU3Hr1G044780.1	Barley	cytosol	80.5	92.65
Zm00001d009150_P002	Maize	plastid	82.86	80.95
EES02883	Sorghum	cytosol, plastid	81.91	79.84
Os01t0321700-01	Rice	cytosol, plastid	76.12	79.6
GSMUA_Achr11P...	Banana	plastid	70.45	69.22
Solyc09g055810.1.1	Tomato	cytosol	6.38	68.35
GSMUA_Achr6P20530_001	Banana	plastid	69.98	67.89
VIT_07s0005g02630.t01	Wine grape	plastid	69.5	67.28
KRG96600	Soybean	nucleus	67.38	65.44
KRH68337	Soybean	nucleus	67.02	65.1
Solyc01g080850.2.1	Tomato	plastid	65.96	63.77
AT4G01810.2	Thale cress	plastid	64.66	62.16
CDY22008	Canola	plastid	63.83	61.78
CDY07119	Canola	plastid	63.36	61.33
Bra036313.1-P	Field mustard	cytosol, plastid	63.95	60.92
Solyc02g021380.1.1	Tomato	plastid	5.08	53.09
Solyc11g056380.1.1	Tomato	cytosol	8.98	49.67
TraesCS4B01G163100.3	Wheat	plastid	15.37	16.62
TraesCS4B01G085800.1	Wheat	cytosol	14.89	16.51
TraesCS5B01G239200.1	Wheat	cytosol	14.78	16.4
TraesCS5B01G386700.1	Wheat	cytosol	13.95	15.69
TraesCS6B01G307800.1	Wheat	cytosol	12.29	15.55

Protein Annotations

Gene3D:1.20.120.730	Gene3D:2.30.30.380	Gene3D:3.40.20.10	Gene3D:3.40.50.410	MapMan:35.2	InterPro:ADF-H/Gelsolin-like_dom_sf
GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005829	GO:GO:0006810	GO:GO:0006886	GO:GO:0006888
GO:GO:0007275	GO:GO:0008150	GO:GO:0008270	GO:GO:0009653	GO:GO:0009791	GO:GO:0009908
GO:GO:0009987	GO:GO:0010584	GO:GO:0016020	GO:GO:0016043	GO:GO:0030127	GO:GO:0048658
GO:GO:0070971	InterPro:Gelsolin-like_dom	InterPro:Gelsolin-like_dom_sf	InterPro:IPR029006	InterPro:IPR036465	PFAM:PF00626
PFAM:PF04810	PFAM:PF04811	PFAM:PF04815	PFAM:PF08033	PANTHER:PTHR11141	PANTHER:PTHR11141:SF6
SUPFAM:SSF53300	SUPFAM:SSF81811	SUPFAM:SSF81995	SUPFAM:SSF82754	SUPFAM:SSF82919	InterPro:Sec23
InterPro:Sec23/24_helical_dom	InterPro:Sec23/24_helical_dom_sf	InterPro:Sec23/24_trunk_dom	InterPro:Sec23_24_beta_S	EnsemblPlantsGene:TraesCS3B01G222900	EnsemblPlants:TraesCS3B01G222900.1
InterPro:Znf_Sec23_Sec24	InterPro:Znf_Sec23_Sec24_sf	TIGR:cd01468	TIGR:cd11280	SEG:seg	InterPro:vWFA_dom_sf

Description

No Description!

Coordinates

chr3B:+:286889885..286893861

Molecular Weight (calculated)

91877.9 Da

IEP (calculated)

7.239

GRAVY (calculated)

-0.077

Length

846 amino acids

Sequence
(BLAST)

001: MEETPPQPQA AHASPPFPAI FTPPSALSST SLRGSPTVPS PAHFSTPPGP PVFSSPLRPA TVPFRTTPIS PQAVPFASRT ASSSSSVSLP TSSAPHTMNG
101: AATPHSHVPS VAPSLEDSSI DSPYVLFSAR KVLKQKKLLN APSLGFGALV SPGREVPPGP EALERDPRRC LNCGAYVNLY CDVLIGSGQW QCVICKKLNS
201: SEGEFVVSSK QDLVQWPELV SSTVDYVHPG SRRPGLIPVP VLRVSGPIFI LIDECLDEAH LQHLQGSLHA FVDSLPPTAR IGIISFGRTV SVYDFSEGAA
301: VSADVLPGSK SLAQESLKVL IYGTGVYLSP IHASLPVAHT IFSSLRPYQF SVAEVSRDRC LGAAVEVALG IIQGPSAELS RGIIKRSGGN CRILVCAGGP
401: NTFGPGSTPH SVQHPNYAYL EKTAMKYMES LGHEARRHST IVDILCAGTC PVRVPVLQPL AKCSGGVLLL HDDFGEAFGV NLQRASTKAT GSHGLFEIRC
501: SDGMLVTQVI GPGEEASPDS HETFKHDTSF CIQMHSVEGT QSFSVSLETK ADIRNDFIYF QFAVRYSNMY QTESTRVITS RLQTVDGLSA YLSSVQEDVA
601: SVIIGKRTVL RAKTASDAFD MRLTIDERIK DVALKFGTQV PKSKLYRFPK ELSSLPECLF HLRRGPLLGS IIGHEDERSV LRSLFLNASF DLSLRMLAPR
701: CIMHREGGTF EELPAYDLTM QSNCAVVLDH GTDIFIWLGA ELATQEGQTA AALAACRTLA EELSELRFPA PRILSFREGS SQARYFVSRL IPAHKDPTYE
801: QESRFPQLRT LAPELRARLK SSFIHFDDPS FCEWMRSLKL VPPEQS

Best Arabidopsis Sequence Match ( AT4G01810.3 )
(BLAST)

001: MANLPKSSVN YPGTLTPLEP NRPSPQPDRT PVPHSPPVVA SPIPPRFPQP SFRPDQMSSP SMKSPSLLSP ANGIRTGSPI PRLSTPPGPP VFNTPVKPAA
101: VPFRTSPATP QPMAYSSANS SLPVSTPSFY SNGSSVGSQR DLPDVVRMEE PIAADSPYVL FSANKVLKQK KLANVASLGF GAIVSAGREI SPGPQIIQRD
201: PHRCLNCGAY SNPYSSILIG SGQWQCVICE NMNGSKGEYV ASSKNELQNF PELSLPLVDY VQTGNKRPGF VPASDSRTSA PVVLVIDECL DEPHLQHLQS
301: SLHAFVDSLP QTTRLGIILY GRTVSIYDFS EDSVASADVI SGAKSPSAES MKALIYGTGV YLSPMHASLK VAHEIFSSLR PYTLNVPEAS RDRCLGTAVE
401: AALAIIQGPS AEMSRGVVRR AGGNSRIIVC AGGPITYGPG SVPHSMSHPN YPYMEKTAIK WMENLGREAH RHNTVVDILC AGTCPLRVPI LQPLAKASGG
501: VLVLHDDFGE AFGVDLQRAA TRAAGSHGLL EVRCSDDILI TQVIGPGEEA HSETHETFKS DAALSIQMLS VEETQSFSLS MENKRDIKSD HVFFQFAFHY
601: SDVYQADVSR VITFKLPTVD SISAYLQSVE DEASAVLISK RTLLLAKNQK DAVDMRATVD ERIKDIALKF GSQVPKSKLY SFPKELSSLP ELLFHLRRGP
701: LLGNIIGHED ERSVLRNLFL NASFDLSLRM VAPRCLMHQE GGTFEELPAY DLSMQSDKAV ILDHGTDVFI WLGAELSADE VKSAAVLAAC RTLAEELTEF
801: RFPAPRILAF KEGSSQARYF VCRLIPAHKD PPYEQEARFP QIRTLTTEQR MKLKSSFIEF DEASFCEWMR SLKVVPPEPR

Arabidopsis Description

Sec23/Sec24 protein transport family protein [Source:UniProtKB/TrEMBL;Acc:Q84WV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.