CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009150_P002	Maize	plastid	92.51	92.73
HORVU3Hr1G044780.1	Barley	cytosol	73.04	86.26
Os01t0321700-01	Rice	cytosol, plastid	76.96	82.57
TraesCS3D01G198500.1	Wheat	plastid	80.41	82.51
TraesCS3A01G195200.1	Wheat	plastid	80.18	82.27
TraesCS3B01G222900.1	Wheat	plastid	79.84	81.91
GSMUA_Achr11P...	Banana	plastid	70.39	70.96
Solyc09g055810.1.1	Tomato	cytosol	6.45	70.89
VIT_07s0005g02630.t01	Wine grape	plastid	69.35	68.88
GSMUA_Achr6P20530_001	Banana	plastid	69.01	68.69
KRG96600	Soybean	nucleus	68.09	67.85
KRH68337	Soybean	nucleus	67.74	67.51
Solyc01g080850.2.1	Tomato	plastid	66.24	65.71
AT4G01810.2	Thale cress	plastid	65.78	64.89
CDY22008	Canola	plastid	64.98	64.53
CDY07119	Canola	plastid	64.52	64.07
Bra036313.1-P	Field mustard	cytosol, plastid	64.98	63.51
Solyc02g021380.1.1	Tomato	plastid	5.18	55.56
Solyc11g056380.1.1	Tomato	cytosol	8.99	50.98
EER96867	Sorghum	cytosol	15.67	17.85
OQU80636	Sorghum	cytosol	15.09	17.17
EER93475	Sorghum	cytosol	14.4	16.6
OQU83385	Sorghum	cytosol, plastid	14.63	16.02
EER99932	Sorghum	cytosol	5.99	14.36

Protein Annotations

Gene3D:1.20.120.730	Gene3D:2.30.30.380	Gene3D:3.40.20.10	Gene3D:3.40.50.410	MapMan:35.2	EntrezGene:8079639
InterPro:ADF-H/Gelsolin-like_dom_sf	UniProt:C5XIW9	EnsemblPlants:EES02883	ProteinID:EES02883	ProteinID:EES02883.1	GO:GO:0000003
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005829	GO:GO:0006810	GO:GO:0006886	GO:GO:0006888	GO:GO:0007275
GO:GO:0008150	GO:GO:0008270	GO:GO:0009653	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987
GO:GO:0010584	GO:GO:0015031	GO:GO:0016020	GO:GO:0016043	GO:GO:0030127	GO:GO:0048658
GO:GO:0070971	InterPro:Gelsolin-like_dom	InterPro:Gelsolin-like_dom_sf	InterPro:IPR029006	InterPro:IPR036465	PFAM:PF00626
PFAM:PF04810	PFAM:PF04811	PFAM:PF04815	PFAM:PF08033	PANTHER:PTHR11141	PANTHER:PTHR11141:SF6
EnsemblPlantsGene:SORBI_3003G150900	SUPFAM:SSF53300	SUPFAM:SSF81811	SUPFAM:SSF81995	SUPFAM:SSF82754	SUPFAM:SSF82919
unigene:Sbi.7296	InterPro:Sec23	InterPro:Sec23/24_helical_dom	InterPro:Sec23/24_helical_dom_sf	InterPro:Sec23/24_trunk_dom	InterPro:Sec23_24_beta_S
UniParc:UPI0001A850D1	RefSeq:XP_002457763.1	InterPro:Znf_Sec23_Sec24	InterPro:Znf_Sec23_Sec24_sf	SEG:seg	InterPro:vWFA_dom_sf

Description

hypothetical protein

Coordinates

chr3:-:15895617..15899914

Molecular Weight (calculated)

93542.5 Da

IEP (calculated)

7.095

GRAVY (calculated)

-0.133

Length

868 amino acids

Sequence
(BLAST)

001: MEETPPGQRP QPQPPSAHAS PPFAQAPFTP PPRVFSPGLA AARGTPSPGS GPGPATAHLS TPPGPPVFSS PLRPAAVPFR ATPASPHPVP FAASGAYSSS
101: SSATAATTGS LPTSSAPHFL NGAATPHGDL ASAPPPLQGD GLDNPYVQFS ANKVLKQKKL LNASSLGFGA LVSPGKDVSP GPEIVERDAR RCLNCGAYVN
201: LYCDVQIGSG QWQCVICKKL NGSEGEFVVS SKQDLLHWPE LASTTVDYVQ VGNRRPGFVP VSDTRVSGPI FILIDECLDE AHLQHLQGSL HAFVDSLPPT
301: AKIGIITYGR TVSVYDFSEG AAVSADVLPG NKSPTHESLK ALIYGTGVYL SPIHASLPVA HTIFSSLRPY QLSVPEVSRD RCVGAAVEVA LGIIQGPSVE
401: LSRGIIKRSG GNCRILVCAG GPSTFGPGSV PHSVKHPNYA YLEKTAMKWM ESLGHEAQRH STVVDIFCAG QCPVRVPVLQ PLAKCSGGVL LVHDDFGEAF
501: GVNLQRASTR AAGSHGLFEI RCSDNMLVTQ VIGPGEEASP DSHETFKHDS SFCIQMHSVE ETQSFSVSME TKGDIKSDFV FFQFAVHYSD IYQTEITRVI
601: TMRLQTVDGL SAYLSSVQQD VASVIIGKRT VLRARTASDA IDMRLSIDER VKDIALKFGT QAPKSKLYRF PKELASLPEC LFHLKRGPLL GSIIGHEDER
701: SVLRNLFLNA SFDLSLRMLA PRCIMHREGG TFEELPAYDL VMQSNAAVVL DHGTDIFIWL GAELAAQEGQ SAAALAACRT LAEELSEQRF PAPRILSFKQ
801: GSSQARYFVS RLIPAHKDPT YEQESRFPQL RTLTPEQRAR LKSSFIQFDD HSFCEWMRSL KLVPPEPS

Best Arabidopsis Sequence Match ( AT4G01810.3 )
(BLAST)

001: MANLPKSSVN YPGTLTPLEP NRPSPQPDRT PVPHSPPVVA SPIPPRFPQP SFRPDQMSSP SMKSPSLLSP ANGIRTGSPI PRLSTPPGPP VFNTPVKPAA
101: VPFRTSPATP QPMAYSSANS SLPVSTPSFY SNGSSVGSQR DLPDVVRMEE PIAADSPYVL FSANKVLKQK KLANVASLGF GAIVSAGREI SPGPQIIQRD
201: PHRCLNCGAY SNPYSSILIG SGQWQCVICE NMNGSKGEYV ASSKNELQNF PELSLPLVDY VQTGNKRPGF VPASDSRTSA PVVLVIDECL DEPHLQHLQS
301: SLHAFVDSLP QTTRLGIILY GRTVSIYDFS EDSVASADVI SGAKSPSAES MKALIYGTGV YLSPMHASLK VAHEIFSSLR PYTLNVPEAS RDRCLGTAVE
401: AALAIIQGPS AEMSRGVVRR AGGNSRIIVC AGGPITYGPG SVPHSMSHPN YPYMEKTAIK WMENLGREAH RHNTVVDILC AGTCPLRVPI LQPLAKASGG
501: VLVLHDDFGE AFGVDLQRAA TRAAGSHGLL EVRCSDDILI TQVIGPGEEA HSETHETFKS DAALSIQMLS VEETQSFSLS MENKRDIKSD HVFFQFAFHY
601: SDVYQADVSR VITFKLPTVD SISAYLQSVE DEASAVLISK RTLLLAKNQK DAVDMRATVD ERIKDIALKF GSQVPKSKLY SFPKELSSLP ELLFHLRRGP
701: LLGNIIGHED ERSVLRNLFL NASFDLSLRM VAPRCLMHQE GGTFEELPAY DLSMQSDKAV ILDHGTDVFI WLGAELSADE VKSAAVLAAC RTLAEELTEF
801: RFPAPRILAF KEGSSQARYF VCRLIPAHKD PPYEQEARFP QIRTLTTEQR MKLKSSFIEF DEASFCEWMR SLKVVPPEPR

Arabidopsis Description

Sec23/Sec24 protein transport family protein [Source:UniProtKB/TrEMBL;Acc:Q84WV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.