Factsheet for VIT_07s0005g02630.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 5
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96600	Soybean	nucleus	79.41	79.68
KRH68337	Soybean	nucleus	78.83	79.1
Solyc01g080850.2.1	Tomato	plastid	77.57	77.49
Solyc09g055810.1.1	Tomato	cytosol	6.86	75.95
GSMUA_Achr6P20530_001	Banana	plastid	75.51	75.69
GSMUA_Achr11P...	Banana	plastid	74.14	75.26
AT4G01810.2	Thale cress	plastid	74.83	74.32
CDY22008	Canola	plastid	73.23	73.23
HORVU3Hr1G044780.1	Barley	cytosol	61.44	73.06
CDY07119	Canola	plastid	72.77	72.77
Bra036313.1-P	Field mustard	cytosol, plastid	73.46	72.3
Zm00001d009150_P002	Maize	plastid	69.91	70.55
TraesCS3A01G195200.1	Wheat	plastid	67.73	69.98
TraesCS3D01G198500.1	Wheat	plastid	67.62	69.86
TraesCS3B01G222900.1	Wheat	plastid	67.28	69.5
EES02883	Sorghum	cytosol, plastid	68.88	69.35
Os01t0321700-01	Rice	cytosol, plastid	63.04	68.11
Solyc02g021380.1.1	Tomato	plastid	5.61	60.49
Solyc11g056380.1.1	Tomato	cytosol	9.5	54.25
VIT_15s0045g00540.t01	Wine grape	cytosol	14.99	16.77
VIT_05s0062g00130.t01	Wine grape	cytosol	14.65	16.6
VIT_05s0020g04710.t01	Wine grape	plasma membrane	13.73	10.59

Protein Annotations

Gene3D:1.20.120.730	EntrezGene:100248579	wikigene:100248579	Gene3D:2.30.30.380	Gene3D:3.40.20.10	Gene3D:3.40.50.410
MapMan:35.2	InterPro:ADF-H/Gelsolin-like_dom_sf	ProteinID:CBI37059	ProteinID:CBI37059.3	UniProt:D7U2U3	EMBL:FN596502
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0006810	GO:GO:0006886	GO:GO:0006888	GO:GO:0008150	GO:GO:0008270
GO:GO:0015031	GO:GO:0016020	GO:GO:0030127	InterPro:Gelsolin-like_dom_sf	InterPro:IPR029006	InterPro:IPR036465
EntrezGene:LOC100248579	wikigene:LOC100248579	PFAM:PF04810	PFAM:PF04811	PFAM:PF04815	PFAM:PF08033
PANTHER:PTHR11141	PANTHER:PTHR11141:SF6	SUPFAM:SSF53300	SUPFAM:SSF81811	SUPFAM:SSF81995	SUPFAM:SSF82754
SUPFAM:SSF82919	InterPro:Sec23	InterPro:Sec23/24_helical_dom	InterPro:Sec23/24_helical_dom_sf	InterPro:Sec23/24_trunk_dom	InterPro:Sec23_24_beta_S
TIGR:TC56941	UniParc:UPI00015CAA40	ArrayExpress:VIT_07s0005g02630	EnsemblPlantsGene:VIT_07s0005g02630	EnsemblPlants:VIT_07s0005g02630.t01	unigene:Vvi.8184
RefSeq:XP_002281404	RefSeq:XP_002281404.1	RefSeq:XP_010652338.1	InterPro:Znf_Sec23_Sec24	InterPro:Znf_Sec23_Sec24_sf	SEG:seg
InterPro:vWFA_dom_sf	:	:	:	:	:

Description

No Description!

Coordinates

chr7:-:4947084..4953012

Molecular Weight (calculated)

95167.5 Da

IEP (calculated)

6.889

GRAVY (calculated)

-0.204

Length

874 amino acids

Sequence
(BLAST)

001: MANPPQPSLG YSGSLTPTQP DAPTLRPEKN SIPPPFPSPV AARFPPPRLQ QEQIPSPSTR TPNLLSPVNG VKTGSPIPHL STPPGPPVFS SPLRPAAVPF
101: RTSPATPQPV AISSSSSLPT SSPPYYSNGS AELQHRVSDA TEESLHLEKS PYVLFSADKV LKRKKQANVP SLGFGALVSP GREISPGPQV IQRDPHRCQN
201: CGAYANLYCN ILLGSGQWQC AICRNLNGSG GEYVATSKEE LLNYPELSSP MVDYVQTGNK RPGFIPVGDL RISAPIVLVI DECLDEAHLQ HLQSSLHAFV
301: DSLPPTTRIG IVLYGRTVSV YDFSEDSFAS ADVLPGDKSP TQDSLKSLIY GTGIYLSAIH ASLPVIHTIF SSLRPYKLNL PEASRDRCLG TAVEVALRII
401: QGPSAEISRG IVKRSGGNSR IIVCAGGPNT YGPGSVPHSL SHPNYPHMEK SALKWMEHLG QEAHRQNTVV DILCAGTCPV RVPILQPLAK ASGGALVLHD
501: DFGEAFGVNL QRASTRAAGS HGLFEIRCSD DILITQVVGP GEEAHTDAHE TFKNDTSLSI QMLSVEETQS FALSMETKGD IKSDYVFFQF AIQYSNVYQA
601: DISRVITVRL PTVDSVSAYL GSVQDDVAAV LIAKRTLLQA KNYSDAIDMR ATIDERVKDI TIKFGSQLPK SKLYRFPKEL SVLPEHLFHL RRGPLLGSIV
701: GHEDERSVLR NLFLNASFDL SLRMIAPRCL MHREGGTFEE LPAYDLAMQS DAAVVLDHGT DVFIWLGAEL AADEGKSASA LAACRTLAEE LTESRFPAPR
801: ILAFKEGSSQ ARYFVSRLIP AHKDPPYEQE ARFPQLRTLT ADQRVKLKSS FLHFDDPSFC EWMRGLKLVP PEPS

Best Arabidopsis Sequence Match ( AT4G01810.3 )
(BLAST)

001: MANLPKSSVN YPGTLTPLEP NRPSPQPDRT PVPHSPPVVA SPIPPRFPQP SFRPDQMSSP SMKSPSLLSP ANGIRTGSPI PRLSTPPGPP VFNTPVKPAA
101: VPFRTSPATP QPMAYSSANS SLPVSTPSFY SNGSSVGSQR DLPDVVRMEE PIAADSPYVL FSANKVLKQK KLANVASLGF GAIVSAGREI SPGPQIIQRD
201: PHRCLNCGAY SNPYSSILIG SGQWQCVICE NMNGSKGEYV ASSKNELQNF PELSLPLVDY VQTGNKRPGF VPASDSRTSA PVVLVIDECL DEPHLQHLQS
301: SLHAFVDSLP QTTRLGIILY GRTVSIYDFS EDSVASADVI SGAKSPSAES MKALIYGTGV YLSPMHASLK VAHEIFSSLR PYTLNVPEAS RDRCLGTAVE
401: AALAIIQGPS AEMSRGVVRR AGGNSRIIVC AGGPITYGPG SVPHSMSHPN YPYMEKTAIK WMENLGREAH RHNTVVDILC AGTCPLRVPI LQPLAKASGG
501: VLVLHDDFGE AFGVDLQRAA TRAAGSHGLL EVRCSDDILI TQVIGPGEEA HSETHETFKS DAALSIQMLS VEETQSFSLS MENKRDIKSD HVFFQFAFHY
601: SDVYQADVSR VITFKLPTVD SISAYLQSVE DEASAVLISK RTLLLAKNQK DAVDMRATVD ERIKDIALKF GSQVPKSKLY SFPKELSSLP ELLFHLRRGP
701: LLGNIIGHED ERSVLRNLFL NASFDLSLRM VAPRCLMHQE GGTFEELPAY DLSMQSDKAV ILDHGTDVFI WLGAELSADE VKSAAVLAAC RTLAEELTEF
801: RFPAPRILAF KEGSSQARYF VCRLIPAHKD PPYEQEARFP QIRTLTTEQR MKLKSSFIEF DEASFCEWMR SLKVVPPEPR

Arabidopsis Description

Sec23/Sec24 protein transport family protein [Source:UniProtKB/TrEMBL;Acc:Q84WV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.