Factsheet for GSMUA_Achr11P17980_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P20530_001	Banana	plastid	83.74	82.68
HORVU3Hr1G044780.1	Barley	cytosol	64.92	76.05
Solyc09g055810.1.1	Tomato	cytosol	6.97	75.95
VIT_07s0005g02630.t01	Wine grape	plastid	75.26	74.14
KRG96600	Soybean	nucleus	73.05	72.22
KRH68337	Soybean	nucleus	72.82	71.99
Zm00001d009150_P002	Maize	plastid	71.43	71.02
TraesCS3D01G198500.1	Wheat	plastid	69.45	70.69
Solyc01g080850.2.1	Tomato	plastid	71.78	70.63
TraesCS3A01G195200.1	Wheat	plastid	69.34	70.57
TraesCS3B01G222900.1	Wheat	plastid	69.22	70.45
EES02883	Sorghum	cytosol, plastid	70.96	70.39
Os01t0321700-01	Rice	cytosol, plastid	65.97	70.21
AT4G01810.2	Thale cress	plastid	69.92	68.41
CDY22008	Canola	plastid	69.11	68.08
CDY07119	Canola	plastid	68.87	67.85
Bra036313.1-P	Field mustard	cytosol, plastid	69.22	67.12
Solyc02g021380.1.1	Tomato	plastid	5.57	59.26
Solyc11g056380.1.1	Tomato	cytosol	9.52	53.59
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	4.41	21.23
GSMUA_Achr4P11140_001	Banana	cytosol	6.39	20.0
GSMUA_Achr10P...	Banana	cytosol, golgi, plastid	13.01	17.13
GSMUA_Achr8P33210_001	Banana	cytosol	14.17	16.64
GSMUA_Achr9P30270_001	Banana	plastid	13.36	16.31
GSMUA_Achr1P25630_001	Banana	plastid	13.82	16.12
GSMUA_Achr11P...	Banana	cytosol	4.07	15.98
GSMUA_AchrUn_...	Banana	cytosol	9.87	15.62
GSMUA_Achr4P11150_001	Banana	cytosol	4.88	10.71
GSMUA_Achr6P19740_001	Banana	cytosol, plastid	0.93	9.64

Protein Annotations

Gene3D:1.20.120.730	Gene3D:2.30.30.380	Gene3D:3.40.20.10	Gene3D:3.40.50.410	MapMan:35.2	InterPro:ADF-H/Gelsolin-like_dom_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0006886	GO:GO:0006888	GO:GO:0008150	GO:GO:0008270	GO:GO:0015031
GO:GO:0016020	GO:GO:0030127	EnsemblPlantsGene:GSMUA_Achr11G17980_001	EnsemblPlants:GSMUA_Achr11P17980_001	EnsemblPlants:GSMUA_Achr11T17980_001	InterPro:Gelsolin-like_dom_sf
InterPro:IPR029006	InterPro:IPR036465	UniProt:M0RT78	PFAM:PF04810	PFAM:PF04811	PFAM:PF04815
PFAM:PF08033	PANTHER:PTHR11141	PANTHER:PTHR11141:SF6	SUPFAM:SSF53300	SUPFAM:SSF81811	SUPFAM:SSF81995
SUPFAM:SSF82754	SUPFAM:SSF82919	InterPro:Sec23	InterPro:Sec23/24_helical_dom	InterPro:Sec23/24_helical_dom_sf	InterPro:Sec23/24_trunk_dom
InterPro:Sec23_24_beta_S	UniParc:UPI000294BCC1	InterPro:Znf_Sec23_Sec24	InterPro:Znf_Sec23_Sec24_sf	SEG:seg	InterPro:vWFA_dom_sf

Description

Putative Protein transport protein SEC23 [Source:GMGC_GENE;Acc:GSMUA_Achr11G17980_001]

Coordinates

chr11:-:19495616..19501722

Molecular Weight (calculated)

94104.9 Da

IEP (calculated)

6.826

GRAVY (calculated)

-0.167

Length

861 amino acids

Sequence
(BLAST)

001: MDTPPQPPRR LGYSAAVASS SNLTPGPNQR PTSSAFTSPE SARLSPQISQ QGQLPPSSGD GVHAGSPVHQ FSTPPGPPVF SSPLRPAAVP FRTSPATPQP
101: VSFSTGSSLP TSSSSHYSNG SHELPLHHSA DEFTFECPYV FFSAHKVLKR KKLANVPSLG FGALVSPGRE ITPGPEVVHR EPHRCRNCGA YANLYCEILV
201: GSGQWQCVIC KNLNSSDGEY IAPSKEDLRH WPELSSSAID YVQTGNSQLG FVSVSDSRVT APIFLLIDEC LDEAHLQHLQ GSLHAFVDSL PPATRLGIIT
301: YGRTVSVFDF SEGSVASADV LPGDKSPTQE SLKALIYGTG VYLSPIHASL PVMHIIFSSL MPYKLKMPEA SRDRCLGTAV EVAVAIIRGP SAEVSRGVIK
401: RSGGNCRIMV CAGGPNTYGP GSVPHSFVHP NYAYMEKTAM KWMEHLGQNA LQHETTVDIL CAGTCPVRVP ILQPLAKSSG GVLILHDDFG EAFGVNLQRA
501: STRAAGSHGL FEIHCSDDIL VTQVIGPGEE ATADSHETFK NDSSFCIQMH SIEETQSFSL SMETKGDIKN DYVYFQFAVC YSNIYQADIS RVITVRLPTV
601: DSVSLYLRSI QEDVAAVLIA KRTVLHAKNF SDAIDMRLTV DERVKDIALK FGSQLPKSKL FRFPNELSTL PESLFHLRRG PLLGNIIGHE DERSVLRNLF
701: LNASFDLSLR MLAPRCLMHR EGGTFEELPA YDLAMQSNAA VVLDHGTDLF IWLGAELAAQ EGKSAAALAA CRTLAEELTE NRFPAPRILA FKEGSSQARY
801: FVSRLIPAHK DPPYEQEARF LQLRSLTPEQ RARLKSSFLH FDDYSFCEWM RSLNLVPPKH S

Best Arabidopsis Sequence Match ( AT4G01810.3 )
(BLAST)

001: MANLPKSSVN YPGTLTPLEP NRPSPQPDRT PVPHSPPVVA SPIPPRFPQP SFRPDQMSSP SMKSPSLLSP ANGIRTGSPI PRLSTPPGPP VFNTPVKPAA
101: VPFRTSPATP QPMAYSSANS SLPVSTPSFY SNGSSVGSQR DLPDVVRMEE PIAADSPYVL FSANKVLKQK KLANVASLGF GAIVSAGREI SPGPQIIQRD
201: PHRCLNCGAY SNPYSSILIG SGQWQCVICE NMNGSKGEYV ASSKNELQNF PELSLPLVDY VQTGNKRPGF VPASDSRTSA PVVLVIDECL DEPHLQHLQS
301: SLHAFVDSLP QTTRLGIILY GRTVSIYDFS EDSVASADVI SGAKSPSAES MKALIYGTGV YLSPMHASLK VAHEIFSSLR PYTLNVPEAS RDRCLGTAVE
401: AALAIIQGPS AEMSRGVVRR AGGNSRIIVC AGGPITYGPG SVPHSMSHPN YPYMEKTAIK WMENLGREAH RHNTVVDILC AGTCPLRVPI LQPLAKASGG
501: VLVLHDDFGE AFGVDLQRAA TRAAGSHGLL EVRCSDDILI TQVIGPGEEA HSETHETFKS DAALSIQMLS VEETQSFSLS MENKRDIKSD HVFFQFAFHY
601: SDVYQADVSR VITFKLPTVD SISAYLQSVE DEASAVLISK RTLLLAKNQK DAVDMRATVD ERIKDIALKF GSQVPKSKLY SFPKELSSLP ELLFHLRRGP
701: LLGNIIGHED ERSVLRNLFL NASFDLSLRM VAPRCLMHQE GGTFEELPAY DLSMQSDKAV ILDHGTDVFI WLGAELSADE VKSAAVLAAC RTLAEELTEF
801: RFPAPRILAF KEGSSQARYF VCRLIPAHKD PPYEQEARFP QIRTLTTEQR MKLKSSFIEF DEASFCEWMR SLKVVPPEPR

Arabidopsis Description

Sec23/Sec24 protein transport family protein [Source:UniProtKB/TrEMBL;Acc:Q84WV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.