Factsheet for GSMUA_Achr10P04950_001

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid, cytosol

Predictor Summary:

nucleus 1
endoplasmic reticulum 1
mitochondrion 2
cytosol 1
plastid 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0433500-01	Rice	cytosol, plasma membrane	45.26	84.33
GSMUA_Achr11P...	Banana	cytosol	26.61	79.45
GSMUA_Achr9P30270_001	Banana	plastid	83.94	77.87
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	20.8	75.98
GSMUA_Achr1P25630_001	Banana	plastid	84.86	75.2
GSMUA_Achr8P33210_001	Banana	cytosol	79.82	71.21
Zm00001d049155_P004	Maize	plastid	81.65	67.51
GSMUA_Achr6P19740_001	Banana	cytosol, plastid	8.56	67.47
OQU83385	Sorghum	cytosol, plastid	81.8	67.47
VIT_05s0062g00130.t01	Wine grape	cytosol	79.36	67.32
TraesCS4D01G151400.1	Wheat	golgi	79.82	66.75
TraesCS4B01G163100.3	Wheat	plastid	79.82	66.75
TraesCS4A01G151800.3	Wheat	cytosol, plastid	79.97	66.54
KRG97365	Soybean	cytosol, endoplasmic reticulum, nucleus	77.83	66.45
KRH31551	Soybean	endoplasmic reticulum	77.68	66.23
CDX90271	Canola	cytosol	73.09	64.77
Bra010748.1-P	Field mustard	cytosol	72.94	64.63
CDY12738	Canola	cytosol	72.48	64.4
CDY12077	Canola	cytosol	72.32	64.18
Solyc05g053830.2.1	Tomato	cytosol, nucleus, plastid	76.45	63.78
Bra032766.1-P	Field mustard	cytosol	75.23	63.73
PGSC0003DMT400040714	Potato	cytosol	76.3	63.65
Bra030613.1-P	Field mustard	cytosol	74.62	63.62
CDY15544	Canola	cytosol	74.62	63.62
CDX86574	Canola	cytosol	74.46	63.49
HORVU4Hr1G041690.2	Barley	cytosol, nucleus	79.51	62.73
PGSC0003DMT400080958	Potato	cytosol	73.24	62.7
CDY01197	Canola	cytosol	72.94	62.6
Solyc09g092680.2.1	Tomato	cytosol	73.24	62.53
AT4G14160.1	Thale cress	cytosol	73.39	62.1
AT3G23660.2	Thale cress	cytosol	74.46	61.57
AT1G05520.1	Thale cress	cytosol	73.55	61.43
Zm00001d004640_P001	Maize	cytosol, plastid	42.66	55.47
CDY12241	Canola	cytosol	49.54	53.29
GSMUA_Achr4P11140_001	Banana	cytosol	22.17	52.73
GSMUA_AchrUn_...	Banana	cytosol	39.14	47.06
Zm00001d004639_P001	Maize	plastid	29.66	46.75
CDY64015	Canola	cytosol	7.95	37.41
Bra021056.1-P	Field mustard	cytosol, nucleus, plastid	9.63	28.25
GSMUA_Achr4P11150_001	Banana	cytosol	12.08	20.15
GSMUA_Achr11P...	Banana	plastid	17.13	13.01
GSMUA_Achr6P20530_001	Banana	plastid	17.13	12.84

Protein Annotations

Gene3D:1.20.120.730	Gene3D:2.60.40.1670	MapMan:22.4.1.3.1	Gene3D:3.40.20.10	Gene3D:3.40.50.410	InterPro:ADF-H/Gelsolin-like_dom_sf
GO:GO:0000139	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0006810	GO:GO:0006886	GO:GO:0006888	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031
GO:GO:0016020	GO:GO:0016043	GO:GO:0030127	GO:GO:0090114	EnsemblPlantsGene:GSMUA_Achr10G04950_001	EnsemblPlants:GSMUA_Achr10P04950_001
EnsemblPlants:GSMUA_Achr10T04950_001	InterPro:Gelsolin-like_dom	InterPro:Gelsolin-like_dom_sf	InterPro:IPR029006	InterPro:IPR036465	UniProt:M0RFH2
PFAM:PF00626	PFAM:PF04811	PFAM:PF04815	PFAM:PF08033	PANTHER:PTHR11141	PANTHER:PTHR11141:SF2
SUPFAM:SSF53300	SUPFAM:SSF81811	SUPFAM:SSF81995	SUPFAM:SSF82754	InterPro:Sec23	InterPro:Sec23/24_helical_dom
InterPro:Sec23/24_helical_dom_sf	InterPro:Sec23/24_trunk_dom	InterPro:Sec23_24_beta_S	InterPro:Sec23_C	UniParc:UPI0002960B27	SEG:seg
InterPro:vWFA_dom_sf	:	:	:	:	:

Description

Putative Protein transport protein SEC23 [Source:GMGC_GENE;Acc:GSMUA_Achr10G04950_001]

Coordinates

chr10:-:14592953..14603579

Molecular Weight (calculated)

72037.3 Da

IEP (calculated)

6.349

GRAVY (calculated)

-0.070

Length

654 amino acids

Sequence
(BLAST)

001: MTWNSWPRSK VEASKCVVPV AASELGFVKS AMRRAIGLLP DQALVGLITF GTQVHLHELG FADMSKIYVF RGTKEIPKEQ ILDQLGLSAS GVRHGAVAGA
101: PGYPKGPQAN GFHPSTSVNR FLLPTSDCEY TLNSLLDELH MDQWPVEAGN RPLRCTGVAL SVAAGLLGAC SAGTGARIIA LVGGPCTIGP GMIVSKDLSE
201: PVRSHKDLDK DAAPHFHKAV KFYDNLAKQL VNQGHVLDLF ASALDQVGVA EMKVAVERTG GLVVLAESFG HSVFKDSFKQ IFEDGEQSLG LSFNGTLEIN
301: CSKDIKIQGI IGPCTSLEKK GAVCADTVVG QGNTTSWKMC GLDRSTCLTV FFDISPSERS NQPGIPNPQL YVQFLTNYQN PEGQMRLRVT TITRTWVDGS
401: NTEELVEGFD QETAAVVLAR YISLKMEMEE EFDATRWLDR SLIRLCSRFG NYRKDDPSSF TLHPNFSILP QFIFNLRRSQ FVQVFNNSPD ETAYFRMLLN
501: RESVSNSVVM IQPSLISYSF NSPPTPALLD VASISADRIL LLDSYFSIVI FHGMTIAQWR NMGYQNQPEH QAFALLLQAP NDDAQMIIRE RFPVPRLVIC
601: DQHGSQARFL LAKLNPSATY NSAQEVVPGS DVIFTDDVSL RVFCEHLQRL AVQS

Best Arabidopsis Sequence Match ( AT3G23660.1 )
(BLAST)

001: MAETANTDLE GIDGVRMTWN VWPHSKAEAS KCVIPLAACI SPIRRHADIP TLPYAPLRCR TCSAALNAYA QVDFTAKLWI CPFCYQRNHF PPHYHVISET
101: NLPGELYPQY TTVEYTLPPP VANGEGLVDP PVFVFVLDTC MIEEELDFAK SALKQAIGLL PENALVGFVS FGTQAHVHEL GFSEMSKVFV FKGDKEISKD
201: QILDQLGLGG SSRRGGSKGP QNGFPSSGLN RFLLPASECE FTLNSLLDEL QSDQWPVKPG HRSQRCTGVA LSVAAGLLGA CLPGTGARIV ALIGGPCTEG
301: PGTIVSKDLS DPVRSHKDLD KDAAPYYKKA VKFYDSIAKQ LVTQGHVLDL FASALDQVGV AEMKVAVERT GGLVVLSESF GHSVFKDSFK RVFEDGDQAL
401: GLCFNGTLEI CCSQDIKIQG AIGPCSSLEK KGASVADTVI GEGNTSAWRL CGLDKTTCLT IFFDISSSGS NTPGAANPQF YLQFLTSYQN PEGQTLLRVT
501: TVCRQWIDSA VSSEELVQGF DQETAAVVMA RLASLKMESE EGFDATRWLD RNLIRLCSKF GDYRKDDPAS FTLNPYFSLF PQFIFNLRRS QFVQVFNNSP
601: DETAYFCMLL NRENISNATV MIQPSLTTYS FNSPAEPALL DVASIAADRI LLLDAYFSVV VFHGMTIAQW RNMGYHHQPE HQAFAELLQA PQEDSQMIVR
701: ERFPVPRLVV CDQHGSQARF LLAKLNPSAT YNNANEMSTG SDVIFTDDVS LQVFFEHLQK LVVQS

Arabidopsis Description

Sec23/Sec24 protein transport family protein [Source:UniProtKB/TrEMBL;Acc:F4J462]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.