CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15544	Canola	cytosol	99.74	99.74
AT1G05520.1	Thale cress	cytosol	89.05	87.23
CDX90271	Canola	cytosol	76.92	79.95
CDY12077	Canola	cytosol	76.79	79.92
KRG97365	Soybean	cytosol, endoplasmic reticulum, nucleus	79.79	79.9
CDY12738	Canola	cytosol	76.4	79.62
KRH31551	Soybean	endoplasmic reticulum	79.01	79.01
VIT_05s0062g00130.t01	Wine grape	cytosol	78.88	78.47
CDY01197	Canola	cytosol	76.4	76.9
Os11t0433500-01	Rice	cytosol, plasma membrane	34.55	75.5
PGSC0003DMT400080958	Potato	cytosol	74.32	74.61
GSMUA_Achr10P...	Banana	cytosol, golgi, plastid	63.49	74.46
PGSC0003DMT400040714	Potato	cytosol	75.88	74.23
Solyc05g053830.2.1	Tomato	cytosol, nucleus, plastid	75.75	74.11
Solyc09g092680.2.1	Tomato	cytosol	73.66	73.76
GSMUA_Achr9P30270_001	Banana	plastid	65.71	71.49
GSMUA_Achr8P33210_001	Banana	cytosol	67.93	71.08
TraesCS4D01G151400.1	Wheat	golgi	72.23	70.84
TraesCS4B01G163100.3	Wheat	plastid	72.23	70.84
OQU83385	Sorghum	cytosol, plastid	73.01	70.62
GSMUA_Achr1P25630_001	Banana	plastid	67.8	70.46
Zm00001d049155_P004	Maize	plastid	72.62	70.42
TraesCS4A01G151800.3	Wheat	cytosol, plastid	72.1	70.36
GSMUA_Achr11P...	Banana	cytosol	19.04	66.67
HORVU4Hr1G041690.2	Barley	cytosol, nucleus	71.97	66.59
CDY12241	Canola	cytosol	51.37	64.8
Zm00001d004639_P001	Maize	plastid	32.2	59.52
CDY13800	Canola	cytosol	54.11	55.04
Zm00001d004640_P001	Maize	cytosol, plastid	35.46	54.08
CDY22339	Canola	cytosol	44.33	45.95
CDY64015	Canola	cytosol	8.21	45.32
CDX94717	Canola	cytosol	43.42	44.28
CDY59754	Canola	cytosol	53.72	43.51
CDY22008	Canola	plastid	15.78	13.84
CDY07119	Canola	plastid	15.65	13.73

Protein Annotations

Gene3D:1.20.120.730	Gene3D:2.30.30.380	Gene3D:2.60.40.1670	MapMan:22.4.1.3.1	Gene3D:3.40.20.10	Gene3D:3.40.50.410
GO:A0A078DE12	InterPro:ADF-H/Gelsolin-like_dom_sf	EnsemblPlants:CDX86574	ProteinID:CDX86574	ProteinID:CDX86574.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0006886	GO:GO:0006888	GO:GO:0008150	GO:GO:0008270	GO:GO:0009987	GO:GO:0016020
GO:GO:0016043	GO:GO:0030127	GO:GO:0090114	EnsemblPlantsGene:GSBRNA2T00145201001	InterPro:Gelsolin-like_dom	InterPro:Gelsolin-like_dom_sf
InterPro:IPR029006	InterPro:IPR036465	PFAM:PF00626	PFAM:PF04810	PFAM:PF04811	PFAM:PF04815
PFAM:PF08033	PANTHER:PTHR11141	PANTHER:PTHR11141:SF2	SUPFAM:SSF53300	SUPFAM:SSF81811	SUPFAM:SSF81995
SUPFAM:SSF82754	SUPFAM:SSF82919	InterPro:Sec23	InterPro:Sec23/24_helical_dom	InterPro:Sec23/24_helical_dom_sf	InterPro:Sec23/24_trunk_dom
InterPro:Sec23_24_beta_S	InterPro:Sec23_C	UniParc:UPI0004EE1837	InterPro:Znf_Sec23_Sec24	InterPro:Znf_Sec23_Sec24_sf	InterPro:vWFA_dom_sf

Description

BnaC08g01290D

Coordinates

chrLK031846:+:760257..764172

Molecular Weight (calculated)

84676.7 Da

IEP (calculated)

5.241

GRAVY (calculated)

-0.126

Length

767 amino acids

Sequence
(BLAST)

001: MAEMESLDPE GIDSVRMTWN VWPRNKVEAS KCVVPVAACI SPIRYHRDIQ SVPYAPLRCR TCSAALNPFA RVDFSAKIWI CPICFQRNHF PPHYHVISET
101: NLPCELYPQY TTVEYSMPGP SQPTGPGNLD QSGAVVFVFV LDTCVIEEEF EYAKCAVRRA VGLLPENALV GFVTFGTQAH VHELGYSDLT KVYVFRGDKE
201: ISKDQVLEQL GLGASGRRTG FPVGRDGSGV SRFLLPASEC EFTIDSLLDE LQTDQWPVQP GRRQSRCTGV ALSVATGLLG ACLPGTGARI VALVGGPCSE
301: GPGTIVSKDL SEPLRSHKDL DKDAAPFYKK AEKFYDGLAN QLVNQGHVLD LFASALDQVG VAEMKAAVER TGGLVVLSES FGHSVFKDSF KRVFEAGEQS
401: LGLCFNGTFE INCSKDIKIQ GIIGPCASLQ KKGPSVADTV VGEGNTTAWK MCGLDKSTCL TVFFDLSSSD QSTNPGAVNN QLYIQFMTSY QNPEGKSLLR
501: VTTVTRQWVD TALSTEELVQ GFDQETAAVV VARLASFKME TEEGFDATRW LDRNLIRLCS KFGDYRKDDP ASFTLNQNFS LFPQFTFNLR RSQFVQVFNN
601: SPDETAYNRM LLNRENISNA AVMIQPSLTT YSFSTLPQPA LLDVASIAAD RILLLDSYIS VVIFHGMTIA QWRNLGYQNQ PEHQAFAQLL EAPQEDAQMI
701: IRERFPVPRL VVCDQHGSQA RFLLAKLNPS ATYNNPSEMN AGSDVIFTDD VSLQVFFQHL QKLAVQS

Best Arabidopsis Sequence Match ( AT1G05520.1 )
(BLAST)

001: MSEMASMDPE GIDGVRMTWN VWPRTKVEAS KCVIPVAACI SPIRYHRDIP SVEYAPLRCR ICTAALNPFA RVDFLAKIWI CPICFQRNHF PPHYHVMSET
101: NVPCELYPQY TTVEYTLPNP SQPTGVGNFD QTGAVSGQPS PSVFVFVLDT CMIEEEFGYA KSALKQAIGL LPENALVGFV SFGTQAHVHE LGFSDLTKVY
201: VFRGDKEISK DQVLEQLGLG ASGRRNPVGG FPMGRDNSAN FGYSGVNRFL LPASDCEFTI DLLLEELQTD QWPVQAGRRQ SRCTGVAISV ATGLLGACFP
301: GTGARIVALI GGPCSEGPGT IVSKDLSEPL RSHKDLDKDA APFYKKAEKF YDALANQLVN QGHVLDLFAS ALDQVGVAEM KAAVERTGGL VVLSESFGHS
401: VFKDSFKRVF EDGEESLGLC FNGTLEICCS KDIKIQGIIG PCASLQKKGP SVADTVIGEG NTTQWKMCGL DKRTCLTVFF DLSSSDQSSA PGGVNNQLYL
501: QFMTSYQNSK GKTLQRVTTV TRQWVDTGLS TEELVQGFDQ ETAAVVVARL ASLKMETEEG FDATRWLDRN LIRLCSKFGD YRKDDPASFT LNPNFSLFPQ
601: FTFNLRRSQF VQVFNNSPDE TAYNRMLLNR ENISNAAVMI QPSLTTYSFN SLPQPALLDV ASIGADRILL LDSYISVVVF HGMTIAQWRN LGYQNQPEHQ
701: AFAQLLEAPQ EDAQMIIRDR FPVPRLVVCD QHGSQARFLL AKLNPSATYN NASEMNAGSD IIFTDDVSLQ VFFQHLQKLA VQS

Arabidopsis Description

At1g05520/T25N20_16 [Source:UniProtKB/TrEMBL;Acc:Q8H0S3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.