Factsheet for PGSC0003DMT400080958

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
endoplasmic reticulum 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g092680.2.1	Tomato	cytosol	98.04	97.78
PGSC0003DMT400040714	Potato	cytosol	86.65	84.44
KRH31551	Soybean	endoplasmic reticulum	78.14	77.84
KRG97365	Soybean	cytosol, endoplasmic reticulum, nucleus	77.88	77.68
VIT_05s0062g00130.t01	Wine grape	cytosol	77.88	77.17
Os11t0433500-01	Rice	cytosol, plasma membrane	34.82	75.78
CDX86574	Canola	cytosol	74.61	74.32
CDY15544	Canola	cytosol	74.61	74.32
Bra030613.1-P	Field mustard	cytosol	74.61	74.32
Bra032766.1-P	Field mustard	cytosol	74.48	73.7
GSMUA_Achr10P...	Banana	cytosol, golgi, plastid	62.7	73.24
CDY12738	Canola	cytosol	70.42	73.1
CDX90271	Canola	cytosol	70.55	73.04
CDY12077	Canola	cytosol	70.42	73.0
Bra010748.1-P	Field mustard	cytosol	70.42	72.9
AT1G05520.1	Thale cress	cytosol	73.69	71.9
AT4G14160.1	Thale cress	cytosol	72.12	71.28
AT3G23660.2	Thale cress	cytosol	73.43	70.92
CDY01197	Canola	cytosol	70.42	70.6
GSMUA_Achr9P30270_001	Banana	plastid	64.92	70.35
GSMUA_Achr8P33210_001	Banana	cytosol	67.28	70.12
PGSC0003DMT400004550	Potato	cytosol	20.81	69.74
GSMUA_Achr1P25630_001	Banana	plastid	66.88	69.24
Zm00001d049155_P004	Maize	plastid	70.29	67.89
TraesCS4B01G163100.3	Wheat	plastid	69.24	67.65
TraesCS4D01G151400.1	Wheat	golgi	69.24	67.65
OQU83385	Sorghum	cytosol, plastid	69.9	67.34
TraesCS4A01G151800.3	Wheat	cytosol, plastid	68.98	67.05
HORVU4Hr1G041690.2	Barley	cytosol, nucleus	68.72	63.33
GSMUA_Achr11P...	Banana	cytosol	18.06	63.01
CDY12241	Canola	cytosol	46.34	58.22
Zm00001d004639_P001	Maize	plastid	30.24	55.66
Zm00001d004640_P001	Maize	cytosol, plastid	35.47	53.88
PGSC0003DMT400034845	Potato	cytosol	11.39	35.37

Protein Annotations

Gene3D:1.20.120.730	EntrezGene:102593721	Gene3D:2.30.30.380	Gene3D:2.60.40.1670	MapMan:22.4.1.3.1	Gene3D:3.40.20.10
Gene3D:3.40.50.410	InterPro:ADF-H/Gelsolin-like_dom_sf	ProteinID:AFX67018	ProteinID:AFX67018.1	GO:GO:0000139	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0006810	GO:GO:0006886	GO:GO:0006888	GO:GO:0008150	GO:GO:0008270	GO:GO:0009987
GO:GO:0015031	GO:GO:0016020	GO:GO:0016043	GO:GO:0030127	GO:GO:0090114	InterPro:Gelsolin-like_dom
InterPro:Gelsolin-like_dom_sf	InterPro:IPR029006	InterPro:IPR036465	EMBL:JX905214	UniProt:M1D480	PFAM:PF00626
PFAM:PF04810	PFAM:PF04811	PFAM:PF04815	PFAM:PF08033	EnsemblPlantsGene:PGSC0003DMG402031533	PGSC:PGSC0003DMG402031533
EnsemblPlants:PGSC0003DMT400080958	PANTHER:PTHR11141	PANTHER:PTHR11141:SF2	SUPFAM:SSF53300	SUPFAM:SSF81811	SUPFAM:SSF81995
SUPFAM:SSF82754	SUPFAM:SSF82919	InterPro:Sec23	InterPro:Sec23/24_helical_dom	InterPro:Sec23/24_helical_dom_sf	InterPro:Sec23/24_trunk_dom
InterPro:Sec23_24_beta_S	InterPro:Sec23_C	UniParc:UPI0002966CEA	RefSeq:XP_006358773.1	InterPro:Znf_Sec23_Sec24	InterPro:Znf_Sec23_Sec24_sf
SEG:seg	InterPro:vWFA_dom_sf	:	:	:	:

Description

Protein transport protein Sec23 [Source:PGSC_GENE;Acc:PGSC0003DMG402031533]

Coordinates

chr9:-:60096623..60103816

Molecular Weight (calculated)

84257.9 Da

IEP (calculated)

5.824

GRAVY (calculated)

-0.039

Length

764 amino acids

Sequence
(BLAST)

001: MATEMAQTDP EGIDGVRMTW NSWPRTKVEA SKCIIPIASS IQLLRPFPDL PTLPYAPLRC KTCSSILNPF CRVDFQALIW ICPFCFQRNH FPQHYSGISE
101: TNVPAELYPQ FTTIQYAIQN PGGHNSPPVY LFVLDTCMLD EELEFAKSAL KRVIGLLPDY AMVGFISYGT QVQVHELGFS DMLKVFVFQG SKDLSKDQVL
201: DQLGLGSISG RKGGGVGVNG GPNHGLTRFL LPASECEYTL DSLLDELNTD QWPVTPGNRA SRCTGVALSV ATGLLGACLA GAGARIVALV GGPCTEGPGA
301: IVSKDLSEPV RSHKDLHKDA APFFRKAVHF YEELAKQLVS HGHILDVFAS ALDQVGVAEM KVAIEKTGGQ VVLAESFGHS VFKDSFKRVF EVGEQSLGLC
401: FNATLEINCS KDIKIQGIIG PCTSLEKKGP AVSSTVTGEG NTTAWKLCGL DKNTCLTVFY DVSSSEKSDP SGNINPQLYI QFLTSYQSPD GQTKLRVTTI
501: TRRWVDAGVG TEDLVQGFDQ EAAAVVMARL ASYKMELEED FDPTRWLDRN LIRLCSKFGE YRKDDPASFT LNPCFSLLPQ FMFHLRRSQF LQVFNNSPDE
601: TAYFRMLLYR ESISNAVVMI QPTLMAFSFN TLPSPALLDV ASIAADRILL LDSYFSVVIF HGMTIAQWRN LGYQNQPEHQ AFAHLLQVPH DEAQALIQER
701: FPVPRLVVCD QHGSQARFLL AKLNPSATYN NANDMAAGSD VIFTDDVSLQ VFFQHLQRLA VQSS

Best Arabidopsis Sequence Match ( AT3G23660.1 )
(BLAST)

001: MAETANTDLE GIDGVRMTWN VWPHSKAEAS KCVIPLAACI SPIRRHADIP TLPYAPLRCR TCSAALNAYA QVDFTAKLWI CPFCYQRNHF PPHYHVISET
101: NLPGELYPQY TTVEYTLPPP VANGEGLVDP PVFVFVLDTC MIEEELDFAK SALKQAIGLL PENALVGFVS FGTQAHVHEL GFSEMSKVFV FKGDKEISKD
201: QILDQLGLGG SSRRGGSKGP QNGFPSSGLN RFLLPASECE FTLNSLLDEL QSDQWPVKPG HRSQRCTGVA LSVAAGLLGA CLPGTGARIV ALIGGPCTEG
301: PGTIVSKDLS DPVRSHKDLD KDAAPYYKKA VKFYDSIAKQ LVTQGHVLDL FASALDQVGV AEMKVAVERT GGLVVLSESF GHSVFKDSFK RVFEDGDQAL
401: GLCFNGTLEI CCSQDIKIQG AIGPCSSLEK KGASVADTVI GEGNTSAWRL CGLDKTTCLT IFFDISSSGS NTPGAANPQF YLQFLTSYQN PEGQTLLRVT
501: TVCRQWIDSA VSSEELVQGF DQETAAVVMA RLASLKMESE EGFDATRWLD RNLIRLCSKF GDYRKDDPAS FTLNPYFSLF PQFIFNLRRS QFVQVFNNSP
601: DETAYFCMLL NRENISNATV MIQPSLTTYS FNSPAEPALL DVASIAADRI LLLDAYFSVV VFHGMTIAQW RNMGYHHQPE HQAFAELLQA PQEDSQMIVR
701: ERFPVPRLVV CDQHGSQARF LLAKLNPSAT YNNANEMSTG SDVIFTDDVS LQVFFEHLQK LVVQS

Arabidopsis Description

Sec23/Sec24 protein transport family protein [Source:UniProtKB/TrEMBL;Acc:F4J462]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.