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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra030613.1-P Field mustard cytosol 87.36 89.18
CDY15544 Canola cytosol 87.36 89.18
CDX86574 Canola cytosol 87.23 89.05
VIT_05s0062g00130.t01 Wine grape cytosol 78.54 79.77
KRG97365 Soybean cytosol, endoplasmic reticulum, nucleus 77.91 79.63
AT4G14160.1 Thale cress cytosol 78.16 79.17
KRH31551 Soybean endoplasmic reticulum 77.39 79.01
AT3G23660.2 Thale cress cytosol 78.54 77.75
Os11t0433500-01 Rice cytosol, plasma membrane 33.46 74.64
PGSC0003DMT400080958 Potato cytosol 71.9 73.69
GSMUA_Achr10P... Banana cytosol, golgi, plastid 61.43 73.55
Solyc05g053830.2.1 Tomato cytosol, nucleus, plastid 73.56 73.47
PGSC0003DMT400040714 Potato cytosol 73.56 73.47
Solyc09g092680.2.1 Tomato cytosol 71.39 72.98
GSMUA_Achr9P30270_001 Banana plastid 64.75 71.91
GSMUA_Achr8P33210_001 Banana cytosol 66.03 70.53
GSMUA_Achr1P25630_001 Banana plastid 66.28 70.33
TraesCS4D01G151400.1 Wheat golgi 68.97 69.05
TraesCS4B01G163100.3 Wheat plastid 68.97 69.05
Zm00001d049155_P004 Maize plastid 69.6 68.9
OQU83385 Sorghum cytosol, plastid 69.73 68.85
TraesCS4A01G151800.3 Wheat cytosol, plastid 68.84 68.58
GSMUA_Achr11P... Banana cytosol 18.26 65.3
HORVU4Hr1G041690.2 Barley cytosol, nucleus 68.71 64.9
Zm00001d004639_P001 Maize plastid 31.03 58.55
AT2G21630.1 Thale cress cytosol 53.9 55.45
Zm00001d004640_P001 Maize cytosol, plastid 34.23 53.28
AT5G43670.1 Thale cress cytosol 43.04 42.44
AT4G01810.2 Thale cress plastid 15.58 13.86
Protein Annotations
Gene3D:1.20.120.730Gene3D:2.30.30.380Gene3D:2.60.40.1670MapMan:22.4.1.3.1Gene3D:3.40.20.10Gene3D:3.40.50.410
EntrezGene:837054UniProt:A0A178W7U4InterPro:ADF-H/Gelsolin-like_dom_sfProteinID:AEE27848.1ArrayExpress:AT1G05520EnsemblPlantsGene:AT1G05520
RefSeq:AT1G05520TAIR:AT1G05520RefSeq:AT1G05520-TAIR-GEnsemblPlants:AT1G05520.1TAIR:AT1G05520.1EMBL:BT002235
GO:GO:0000139GO:GO:0003674GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005794GO:GO:0005829GO:GO:0006810GO:GO:0006886GO:GO:0006888
GO:GO:0008150GO:GO:0008270GO:GO:0009987GO:GO:0015031GO:GO:0016020GO:GO:0016043
GO:GO:0030127GO:GO:0090114InterPro:Gelsolin-like_domInterPro:Gelsolin-like_dom_sfInterPro:IPR029006InterPro:IPR036465
RefSeq:NP_563741.1ProteinID:OAP14216.1PFAM:PF00626PFAM:PF04810PFAM:PF04811PFAM:PF04815
PFAM:PF08033PO:PO:0000005PO:PO:0000013PO:PO:0000037PO:PO:0000084PO:PO:0000230
PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507
PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123
PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009
PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032
PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100
PO:PO:0020137PO:PO:0025022PO:PO:0025281PANTHER:PTHR11141PANTHER:PTHR11141:SF2UniProt:Q8H0S3
SUPFAM:SSF53300SUPFAM:SSF81811SUPFAM:SSF81995SUPFAM:SSF82754SUPFAM:SSF82919InterPro:Sec23
InterPro:Sec23/24_helical_domInterPro:Sec23/24_helical_dom_sfInterPro:Sec23/24_trunk_domInterPro:Sec23_24_beta_SInterPro:Sec23_CUniParc:UPI00000ADB69
InterPro:Znf_Sec23_Sec24InterPro:Znf_Sec23_Sec24_sfInterPro:vWFA_dom_sf:::
Description
At1g05520/T25N20_16 [Source:UniProtKB/TrEMBL;Acc:Q8H0S3]
Coordinates
chr1:-:1630849..1636018
Molecular Weight (calculated)
86361.9 Da
IEP (calculated)
5.328
GRAVY (calculated)
-0.127
Length
783 amino acids
Sequence
(BLAST)
001: MSEMASMDPE GIDGVRMTWN VWPRTKVEAS KCVIPVAACI SPIRYHRDIP SVEYAPLRCR ICTAALNPFA RVDFLAKIWI CPICFQRNHF PPHYHVMSET
101: NVPCELYPQY TTVEYTLPNP SQPTGVGNFD QTGAVSGQPS PSVFVFVLDT CMIEEEFGYA KSALKQAIGL LPENALVGFV SFGTQAHVHE LGFSDLTKVY
201: VFRGDKEISK DQVLEQLGLG ASGRRNPVGG FPMGRDNSAN FGYSGVNRFL LPASDCEFTI DLLLEELQTD QWPVQAGRRQ SRCTGVAISV ATGLLGACFP
301: GTGARIVALI GGPCSEGPGT IVSKDLSEPL RSHKDLDKDA APFYKKAEKF YDALANQLVN QGHVLDLFAS ALDQVGVAEM KAAVERTGGL VVLSESFGHS
401: VFKDSFKRVF EDGEESLGLC FNGTLEICCS KDIKIQGIIG PCASLQKKGP SVADTVIGEG NTTQWKMCGL DKRTCLTVFF DLSSSDQSSA PGGVNNQLYL
501: QFMTSYQNSK GKTLQRVTTV TRQWVDTGLS TEELVQGFDQ ETAAVVVARL ASLKMETEEG FDATRWLDRN LIRLCSKFGD YRKDDPASFT LNPNFSLFPQ
601: FTFNLRRSQF VQVFNNSPDE TAYNRMLLNR ENISNAAVMI QPSLTTYSFN SLPQPALLDV ASIGADRILL LDSYISVVVF HGMTIAQWRN LGYQNQPEHQ
701: AFAQLLEAPQ EDAQMIIRDR FPVPRLVVCD QHGSQARFLL AKLNPSATYN NASEMNAGSD IIFTDDVSLQ VFFQHLQKLA VQS
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.