CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY01197	Canola	cytosol	97.96	94.62
CDX90271	Canola	cytosol	94.29	94.04
CDY12077	Canola	cytosol	93.75	93.62
Bra032766.1-P	Field mustard	cytosol	93.34	88.99
AT4G14160.1	Thale cress	cytosol	85.46	81.37
VIT_05s0062g00130.t01	Wine grape	cytosol	80.16	76.52
CDX86574	Canola	cytosol	79.62	76.4
CDY15544	Canola	cytosol	79.62	76.4
KRG97365	Soybean	cytosol, endoplasmic reticulum, nucleus	79.21	76.11
KRH31551	Soybean	endoplasmic reticulum	78.12	74.97
Os11t0433500-01	Rice	cytosol, plasma membrane	35.46	74.36
GSMUA_Achr10P...	Banana	cytosol, golgi, plastid	64.4	72.48
Solyc05g053830.2.1	Tomato	cytosol, nucleus, plastid	76.22	71.56
PGSC0003DMT400040714	Potato	cytosol	76.22	71.56
PGSC0003DMT400080958	Potato	cytosol	73.1	70.42
GSMUA_Achr9P30270_001	Banana	plastid	67.26	70.21
Solyc09g092680.2.1	Tomato	cytosol	72.83	69.97
GSMUA_Achr1P25630_001	Banana	plastid	69.16	68.97
GSMUA_Achr8P33210_001	Banana	cytosol	68.48	68.76
GSMUA_Achr11P...	Banana	cytosol	19.97	67.12
CDY64015	Canola	cytosol	12.64	66.91
Zm00001d049155_P004	Maize	plastid	71.6	66.62
OQU83385	Sorghum	cytosol, plastid	71.74	66.58
TraesCS4D01G151400.1	Wheat	golgi	70.11	65.98
TraesCS4B01G163100.3	Wheat	plastid	70.11	65.98
TraesCS4A01G151800.3	Wheat	cytosol, plastid	69.84	65.39
HORVU4Hr1G041690.2	Barley	cytosol, nucleus	69.97	62.12
CDY12241	Canola	cytosol	47.28	57.24
CDY13800	Canola	cytosol	56.66	55.3
Zm00001d004640_P001	Maize	cytosol, plastid	36.96	54.08
Zm00001d004639_P001	Maize	plastid	29.76	52.77
CDY22339	Canola	cytosol	45.65	45.41
CDX94717	Canola	cytosol	45.52	44.55
CDY59754	Canola	cytosol	55.84	43.4
CDY22008	Canola	plastid	15.76	13.27
CDY07119	Canola	plastid	15.62	13.16

Protein Annotations

Gene3D:1.20.120.730	Gene3D:2.30.30.380	Gene3D:2.60.40.1670	MapMan:22.4.1.3.1	Gene3D:3.40.20.10	Gene3D:3.40.50.410
GO:A0A078FKP2	UniProt:A0A078FKP2	InterPro:ADF-H/Gelsolin-like_dom_sf	EnsemblPlants:CDY12738	ProteinID:CDY12738	ProteinID:CDY12738.1
GO:GO:0000139	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0006886	GO:GO:0006888	GO:GO:0008150
GO:GO:0008270	GO:GO:0009987	GO:GO:0015031	GO:GO:0016020	GO:GO:0016043	GO:GO:0030127
GO:GO:0090114	EnsemblPlantsGene:GSBRNA2T00070313001	InterPro:Gelsolin-like_dom	InterPro:Gelsolin-like_dom_sf	InterPro:IPR029006	InterPro:IPR036465
PFAM:PF00626	PFAM:PF04810	PFAM:PF04811	PFAM:PF04815	PFAM:PF08033	PANTHER:PTHR11141
PANTHER:PTHR11141:SF2	SUPFAM:SSF53300	SUPFAM:SSF81811	SUPFAM:SSF81995	SUPFAM:SSF82754	SUPFAM:SSF82919
InterPro:Sec23	InterPro:Sec23/24_helical_dom	InterPro:Sec23/24_helical_dom_sf	InterPro:Sec23/24_trunk_dom	InterPro:Sec23_24_beta_S	InterPro:Sec23_C
UniParc:UPI0004EF4374	InterPro:Znf_Sec23_Sec24	InterPro:Znf_Sec23_Sec24_sf	SEG:seg	InterPro:vWFA_dom_sf	:

Description

BnaC04g29030DBnaC04g29030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FKP2]

Coordinates

chrLK032026:+:538625..543550

Molecular Weight (calculated)

81113.7 Da

IEP (calculated)

5.760

GRAVY (calculated)

-0.119

Length

736 amino acids

Sequence
(BLAST)

001: MAEMANMDPE GMDGVRMTWN VWPRTKVEAS KCVIPLAASI SPIRRHSEIP SLPYAPLKCR TCVAVLNAFA RVDFAAKIWI CPFCFQRNPF PPHYHMISET
101: NLPGELYPQY TTVEYALPST AGQFDPRTGA APPQTPPPVF VFAHVHELGF SEMSKVFVFK GNKEVSKDHV LDQLGLSSRR APSSGFPKGA QNGFQSAAGV
201: NRFLLPASDC EYTLDLLLDE LQTDQWPVQP GHRPQRCTGV ALSVAAGLLG ACLPGTGARI VALVGGPCTE GPGTIISKDL SDPVRSHKDL DKDAAPYYKK
301: AVKFYDSIAK QLVAQGHVLD LFASALDQVG VAEMKVAVES TGGLVVLSES FGHSVFKDSF KRVFEDGEQS LGLCSNGTLE INCSKDIKIQ GAIGPCSSLE
401: KKGPSVADTV IGEGNTNAWK LCGLDKSTCL TVFFDLSSTG LNAPGTVNPQ FYLQFLTSYQ NPEGQTLLRV TTITRQWVDT AVSTEELVQG FDQETAAVVM
501: ARLASFKMET EEGFDATRWL DRTLIRLCSK FGDYRKDDPT SFTLNPYFSL FPQFMFNLRR SQFVQVFNNS PDETAYFRML LNRENISNAT VMIQPSLTSY
601: TFSSPPQPAL LDVASIAADR ILLLDAYFSV VVFHGMTIAQ WRNMGYHEQP EHEAFAQLLQ APQEDSQMIV RERFPVPRLV VCDQHGSQAR FLLAKLNPSA
701: TYNNANEMSA GSDVIFTDDV SLQVFFEHLQ KLAVQS

Best Arabidopsis Sequence Match ( AT4G14160.2 )
(BLAST)

001: MAEMADKAKV EEMDWEGIDG VRMTWNLWPR TKVEASKCVI PLAASISPIR RHPLILDLPY APLDCKTCKA LLNAFARVDF AAMNWVCPFC YHRNHFPSHY
101: HSISEINLPG ELYPQYTTVE YTLPPDPSRV PPPPVFVFVL DTCMIEEELG YAKSALKQAI GLLPENALVG FVSFGTQAHV HELGFSEMSK VFVFKGNKEV
201: TKDQILDQLG LGSSSRRAPT SGFSKGAQNG FQSSGVDRFL LPASECEYTL DLLLDELQSD QWPVQPGHRP QRCTGVALSV AAGLLGACLP GTGARIVALV
301: GGPCTEGPGT IISKDLSDPV RSHKDLDKDA APYYKKAVKF YDSIAKQLVA QGHVLDLFAS ALDQVGVAEM KVAVESTGGL VVLSESFGHS VFKDSFKRMF
401: EDGEHSLGLC FNGTLEINCS KDIKIQGVIG PCSSLEKKGP NVADTVIGEG NTSAWKLCGL DKSTCLTVFF DLSSTGSTAP GALNQQLYLQ FITRYQNSEG
501: KSLARVTTLT RQWVDTAVST ENLVQGFDQE TAAVVMARLT SLKMETEEGF DATRWLDRTL IRLCSKFGEY RKDDPTSFTL KPYLTLFPQF MFNLRRSQFV
601: QVFNNSPDET AYFRMLLNRE NISNAIVMIQ PSLTSYSFNS GPQAALLDVA SIAADKILLL DAYFSVVVFH GMTISQWRNM GYHHQPEHEA FAQLLQAPQE
701: DSQMLVRERF PVPRLVVCDQ HGSQARFLLA KLNPSATYNN ANEMSAGSDI IFTDDVSLQV FIEHLQKLAV QS

Arabidopsis Description

Sec23/Sec24 protein transport family protein [Source:UniProtKB/TrEMBL;Acc:F4JUM1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.