CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX97739
CDY30157

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43670.1	CDX97739	AT3G16310.1	21798944
AT5G43670.1	CDY30157	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22339	Canola	cytosol	92.02	93.51
AT5G43670.1	Thale cress	cytosol	85.77	81.23
GSMUA_Achr4P11140_001	Banana	cytosol	24.2	66.18
KRG97332	Soybean	cytosol	61.44	63.29
Solyc03g005380.2.1	Tomato	cytosol, golgi, plasma membrane	64.36	62.21
Zm00001d013301_P002	Maize	cytosol	59.04	58.96
Os03t0742800-02	Rice	cytosol	59.04	58.65
TraesCS5D01G391900.1	Wheat	cytosol	58.64	58.64
TraesCS5B01G386700.1	Wheat	cytosol	58.51	58.51
EER93475	Sorghum	cytosol	58.51	58.43
TraesCS5A01G382500.2	Wheat	cytosol	58.38	58.38
Zm00001d033975_P002	Maize	cytosol	57.45	55.1
PGSC0003DMT400034845	Potato	cytosol	17.82	54.47
HORVU5Hr1G094210.8	Barley	cytosol, plastid	48.94	49.07
GSMUA_Achr4P11150_001	Banana	cytosol	23.94	45.92
CDY12738	Canola	cytosol	44.55	45.52
CDY12077	Canola	cytosol	44.55	45.45
CDX90271	Canola	cytosol	44.28	45.12
VIT_05s0020g04710.t01	Wine grape	plasma membrane	67.29	44.66
CDY01197	Canola	cytosol	44.41	43.83
CDY15544	Canola	cytosol	44.28	43.42
CDX86574	Canola	cytosol	44.28	43.42
CDY13800	Canola	cytosol	42.02	41.91
CDY12241	Canola	cytosol	31.38	38.82
CDY59754	Canola	cytosol	41.22	32.73
CDY64015	Canola	cytosol	4.92	26.62
CDY22008	Canola	plastid	16.09	13.84
CDY07119	Canola	plastid	15.96	13.73

Protein Annotations

Gene3D:1.20.120.730	Gene3D:2.30.30.380	Gene3D:2.60.40.1670	MapMan:22.4.1.3.1	Gene3D:3.40.20.10	Gene3D:3.40.50.410
GO:A0A078E0Q1	InterPro:ADF-H/Gelsolin-like_dom_sf	EnsemblPlants:CDX94717	ProteinID:CDX94717	ProteinID:CDX94717.1	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0006886	GO:GO:0006888	GO:GO:0008150	GO:GO:0008270	GO:GO:0009987
GO:GO:0016020	GO:GO:0016043	GO:GO:0030127	GO:GO:0090114	EnsemblPlantsGene:GSBRNA2T00158102001	InterPro:Gelsolin-like_dom
InterPro:Gelsolin-like_dom_sf	InterPro:IPR029006	InterPro:IPR036465	PFAM:PF00626	PFAM:PF04810	PFAM:PF04811
PFAM:PF04815	PFAM:PF08033	PANTHER:PTHR11141	PANTHER:PTHR11141:SF4	SUPFAM:SSF53300	SUPFAM:SSF81811
SUPFAM:SSF81995	SUPFAM:SSF82754	SUPFAM:SSF82919	InterPro:Sec23	InterPro:Sec23/24_helical_dom	InterPro:Sec23/24_helical_dom_sf
InterPro:Sec23/24_trunk_dom	InterPro:Sec23_24_beta_S	InterPro:Sec23_C	UniParc:UPI0004EE5810	InterPro:Znf_Sec23_Sec24	InterPro:Znf_Sec23_Sec24_sf
SEG:seg	InterPro:vWFA_dom_sf	:	:	:	:

Description

BnaC07g17260D

Coordinates

chrLK031884:-:184311..187022

Molecular Weight (calculated)

84518.1 Da

IEP (calculated)

6.459

GRAVY (calculated)

-0.121

Length

752 amino acids

Sequence
(BLAST)

001: MDFLELEAIE GLRWSWNSWP TTKSDSESLV VPLSIMYTPL MHFSELPTIS YDPLTCSRCA AVLNPYARVD YKSRIWACPF CFHKNPFPRS YAGITETNLP
101: AELFPTYSAV EYSPSSASGG VSDGELGPAF VFVVDASMAE EELRALRSEL LLVIEQLPES SLVGLITFDS MVRVYDLGFS ECSKVVVFHG ERELPPEQIQ
201: QFLGLGYSKQ LRHGKMSAIR KQSFLLPLEE CEFNLTSAFE EIAPLVDVKP GHRPHRSTGT AISTALGLLQ GCSVTTGARI MVFTSGPATR GPGIVVSSDL
301: NHSIRTHRDI ITAQVPYFDR SCKFYKRIAK RLCDSSAALD LFACSLDQVG AAELRYAVEM SGGFLLLGET FESDQFKKCL RHIFSRDGDG NLNMCFDVTL
401: EVVTTKDIKI CGALGPVVSL RRKNDIVSDT EIGEGGTYTW KTSTATNKTC VSFFFQVSNE QNRKPKPGSA FFIQFITRYR YGNGGVKKRV TTVARRWVAG
501: KSPEISSGFD QETAVSVMAR LAINRAEECY ARDVIRWLDD SLIRFASRFG DYIQEDPSSF RLTPNFSLYP QFMFYLRRSQ FLDVFNNSPD ETGFFRLMLN
601: REGVVNSIIM IQPTLLRYSF DGPPVPVLLD IRSVTPDAIL LFDSYFYVVI HHGLKIAQWR KQEYHKDSNH ETFRNLLEAP EMDVVQLVSD RIPMPRIVRC
701: DQHGSQARFL LAKLNPSVTQ KTDHTGGSDV VLTDDLCLED FLADLQSLAV RK

Best Arabidopsis Sequence Match ( AT5G43670.1 )
(BLAST)

001: MDFLELEAIE GLRWSWNSWP TTKSDCESLV VPLSIMYTPL MHFSELPTIP YDPLICSRCG AVLNPYARVD YQSRIWSCPF CFHKNLFPRS YSGITETNLP
101: AELFPTYSAV EYSPLPSRQS GSNTTTPTAA ASWSNGFNQG VRSMPSNSSF SSLASSTVGG GGGVISELGP AFVFVVDASM VEDELRAVRS DVLFVIEQLP
201: ENCLVALITF DSMVRVYDLG FSECSKVVVF HGERDLSPDQ IQQFLGLGYS KQFHHGKMSA IRKQSFLLPL VECEFNLTSA FEEIIPLVDV KPGHRPHRST
301: GAAISTALGL LEGCSVTTGS RIMVFTSGPA TRGPGIIVDS DLSNSIRTHR DIITGHVSYY DKSCGFYKKL AKRLCDSSVV LDVFACSLDQ VGAAELRYAV
401: EMSGGFLLLG ETFESEQFKK CLRHIFIRDA DGNLSMYFDV SLEVVTTKDM RICGALGPVV SLRQKNDIVS ETEIGEGGTY MWKTSTVTNK TCVSFFFHVS
501: NEQNRKPQPG SAFFIQFITR YRYGNGAMRK RVTTVARRWV AGKSPEISSS FDQETAASVM ARLAINRAEE CHARDVITWL DNGLIRFASR FGDYIQEDPS
601: SFRLTPNFSL YPQFMFYLRR SQFLDVFNNS PDETGFFRLM LNREGVVNSI IMIQPTLLRY SFDGPPVPVL LDIRSVTPDV ILLFDSYFYV VIHHGSKIAQ
701: WRKLEYHKDP SHETFRNLLE APEIDAAQLV TDRIPMPRIV RCDQHGSQAR FLLAKLNPSV TQKTDHTGGS DIVLTDDMSL QDFLEDLQSL AVKG

Arabidopsis Description

At5g43670 [Source:UniProtKB/TrEMBL;Acc:Q84WI4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.