Factsheet for GSMUA_Achr6P20530_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	plastid	82.68	83.74
Solyc09g055810.1.1	Tomato	cytosol	6.88	75.95
VIT_07s0005g02630.t01	Wine grape	plastid	75.69	75.51
HORVU3Hr1G044780.1	Barley	cytosol	63.3	75.1
KRH68337	Soybean	nucleus	71.33	71.41
KRG96600	Soybean	nucleus	71.1	71.18
Zm00001d009150_P002	Maize	plastid	69.84	70.32
Solyc01g080850.2.1	Tomato	plastid	70.53	70.29
TraesCS3D01G198500.1	Wheat	plastid	68.12	70.21
TraesCS3A01G195200.1	Wheat	plastid	68.12	70.21
TraesCS3B01G222900.1	Wheat	plastid	67.89	69.98
Os01t0321700-01	Rice	cytosol, plastid	64.45	69.47
EES02883	Sorghum	cytosol, plastid	68.69	69.01
AT4G01810.2	Thale cress	plastid	68.46	67.84
CDY22008	Canola	plastid	66.63	66.48
CDY07119	Canola	plastid	66.4	66.25
Bra036313.1-P	Field mustard	cytosol, plastid	67.32	66.1
Solyc02g021380.1.1	Tomato	plastid	5.5	59.26
Solyc11g056380.1.1	Tomato	cytosol	9.17	52.29
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	4.47	21.79
GSMUA_Achr4P11140_001	Banana	cytosol	6.31	20.0
GSMUA_Achr10P...	Banana	cytosol, golgi, plastid	12.84	17.13
GSMUA_Achr9P30270_001	Banana	plastid	13.3	16.45
GSMUA_Achr1P25630_001	Banana	plastid	13.76	16.26
GSMUA_Achr8P33210_001	Banana	cytosol	13.53	16.1
GSMUA_Achr11P...	Banana	cytosol	3.9	15.53
GSMUA_AchrUn_...	Banana	cytosol	9.52	15.26
GSMUA_Achr6P19740_001	Banana	cytosol, plastid	1.03	10.84
GSMUA_Achr4P11150_001	Banana	cytosol	4.7	10.46

Protein Annotations

Gene3D:1.20.120.730	Gene3D:2.30.30.380	Gene3D:3.40.20.10	Gene3D:3.40.50.410	MapMan:35.2	InterPro:ADF-H/Gelsolin-like_dom_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0006886	GO:GO:0006888	GO:GO:0008150	GO:GO:0008270	GO:GO:0015031
GO:GO:0016020	GO:GO:0030127	EnsemblPlantsGene:GSMUA_Achr6G20530_001	EnsemblPlants:GSMUA_Achr6P20530_001	EnsemblPlants:GSMUA_Achr6T20530_001	InterPro:Gelsolin-like_dom
InterPro:Gelsolin-like_dom_sf	InterPro:IPR029006	InterPro:IPR036465	UniProt:M0T8Q1	PFAM:PF00626	PFAM:PF04810
PFAM:PF04811	PFAM:PF04815	PFAM:PF08033	PANTHER:PTHR11141	PANTHER:PTHR11141:SF6	SUPFAM:SSF53300
SUPFAM:SSF81811	SUPFAM:SSF81995	SUPFAM:SSF82754	SUPFAM:SSF82919	InterPro:Sec23	InterPro:Sec23/24_helical_dom
InterPro:Sec23/24_helical_dom_sf	InterPro:Sec23/24_trunk_dom	InterPro:Sec23_24_beta_S	UniParc:UPI0002968AEA	InterPro:Znf_Sec23_Sec24	InterPro:Znf_Sec23_Sec24_sf
SEG:seg	InterPro:vWFA_dom_sf	:	:	:	:

Description

Putative Protein transport protein SEC23 [Source:GMGC_GENE;Acc:GSMUA_Achr6G20530_001]

Coordinates

chr6:+:15105299..15112197

Molecular Weight (calculated)

95471.5 Da

IEP (calculated)

7.072

GRAVY (calculated)

-0.232

Length

872 amino acids

Sequence
(BLAST)

001: MDTPTRPPPP PGSSAAVASP NTPTPRPERR PTPPAFSSPL SARFSPQIPQ QDRLPLSSSR TPGSLSSGEG VHHTSSPVPQ FSTPPGPPIF SSPLRPAAVP
101: FQASPATPQP VAFSWGSSLP TSSSPPYSNG SSELPLHHSA DVDEYTLESP YVLFSAHKVL KRKKLANVPS LGFGALVSPG REIAPGPEVV HHEPHRCQTC
201: GAYSNLYCEI LVGSGQWQCV ICKNLNSSDG EYIAPSKEDL RHWPELSSSA IDYVQNGNRP GFVPVSDTRI TAPIFLVIDE CLDEAHLQHL QGSLHAFADS
301: LPPTMRLGII TYGRSVSVFD FSEGSVASAD VLPGDKSPSQ ESLKALLYGT GIYLSPVHAS LPVVHTIFSS LRPYKLNLPE ASRDRCLGTA VEVALAIIRG
401: PSADRTRGII KRSGGNCRVL VCSGGPNTYG PGSVPHSFSH PNYAYMEKTA MKWMDHLGQE ALRHNTTVDI LCAGTCPVRI PILQPLAKSS GGVLILHDDF
501: GEAFGVNLQR ASSRAAGSHG LFEIRCSDDI LVTQVIGPGE EAAVDSHETF KRDSSFCIQM HSVEETQSFA LSMETKGDIK NDYVYFQFAV RYSNIYHTDI
601: SRVITVRLPT VDSVSMYLRS IQENAAAVLI AKRTLLHAKT FSDAIDMRLT VDERVKDIAV KYGSQLPKSR LYRFPQELST LPESLFHLRR GPLLGNIVGH
701: EDERSVLRNL FLNASFDLSL RMLAPRCLMH RDGGTFEELP AYDLAMQSNV AVVLDHGTEI FIWLGAELAA QEGKSAAALA ACRTLAEELT EHRFPAPRIL
801: AFKEGSSQAR YFVSRLIPAH KDPPYEQEAR FPQLRTLTPE QRTRLKSSFL HFDDYSFCEW MRSLKLVPPE PS

Best Arabidopsis Sequence Match ( AT4G01810.3 )
(BLAST)

001: MANLPKSSVN YPGTLTPLEP NRPSPQPDRT PVPHSPPVVA SPIPPRFPQP SFRPDQMSSP SMKSPSLLSP ANGIRTGSPI PRLSTPPGPP VFNTPVKPAA
101: VPFRTSPATP QPMAYSSANS SLPVSTPSFY SNGSSVGSQR DLPDVVRMEE PIAADSPYVL FSANKVLKQK KLANVASLGF GAIVSAGREI SPGPQIIQRD
201: PHRCLNCGAY SNPYSSILIG SGQWQCVICE NMNGSKGEYV ASSKNELQNF PELSLPLVDY VQTGNKRPGF VPASDSRTSA PVVLVIDECL DEPHLQHLQS
301: SLHAFVDSLP QTTRLGIILY GRTVSIYDFS EDSVASADVI SGAKSPSAES MKALIYGTGV YLSPMHASLK VAHEIFSSLR PYTLNVPEAS RDRCLGTAVE
401: AALAIIQGPS AEMSRGVVRR AGGNSRIIVC AGGPITYGPG SVPHSMSHPN YPYMEKTAIK WMENLGREAH RHNTVVDILC AGTCPLRVPI LQPLAKASGG
501: VLVLHDDFGE AFGVDLQRAA TRAAGSHGLL EVRCSDDILI TQVIGPGEEA HSETHETFKS DAALSIQMLS VEETQSFSLS MENKRDIKSD HVFFQFAFHY
601: SDVYQADVSR VITFKLPTVD SISAYLQSVE DEASAVLISK RTLLLAKNQK DAVDMRATVD ERIKDIALKF GSQVPKSKLY SFPKELSSLP ELLFHLRRGP
701: LLGNIIGHED ERSVLRNLFL NASFDLSLRM VAPRCLMHQE GGTFEELPAY DLSMQSDKAV ILDHGTDVFI WLGAELSADE VKSAAVLAAC RTLAEELTEF
801: RFPAPRILAF KEGSSQARYF VCRLIPAHKD PPYEQEARFP QIRTLTTEQR MKLKSSFIEF DEASFCEWMR SLKVVPPEPR

Arabidopsis Description

Sec23/Sec24 protein transport family protein [Source:UniProtKB/TrEMBL;Acc:Q84WV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.