CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68337	Soybean	nucleus	97.93	97.93
VIT_07s0005g02630.t01	Wine grape	plastid	79.68	79.41
Solyc09g055810.1.1	Tomato	cytosol	7.12	78.48
Solyc01g080850.2.1	Tomato	plastid	75.89	75.54
AT4G01810.2	Thale cress	plastid	75.55	74.77
CDY22008	Canola	plastid	73.59	73.34
GSMUA_Achr11P...	Banana	plastid	72.22	73.05
CDY07119	Canola	plastid	73.25	73.0
HORVU3Hr1G044780.1	Barley	cytosol	61.54	72.93
Bra036313.1-P	Field mustard	cytosol, plastid	73.48	72.07
GSMUA_Achr6P20530_001	Banana	plastid	71.18	71.1
Zm00001d009150_P002	Maize	plastid	67.74	68.13
EES02883	Sorghum	cytosol, plastid	67.85	68.09
TraesCS3A01G195200.1	Wheat	plastid	65.79	67.73
TraesCS3D01G198500.1	Wheat	plastid	65.79	67.73
TraesCS3B01G222900.1	Wheat	plastid	65.44	67.38
Os01t0321700-01	Rice	cytosol, plastid	62.23	67.0
Solyc02g021380.1.1	Tomato	plastid	5.51	59.26
Solyc11g056380.1.1	Tomato	cytosol	9.87	56.21
KRG97332	Soybean	cytosol	14.58	17.4
KRH66226	Soybean	cytosol, endoplasmic reticulum	14.12	16.04
KRH31551	Soybean	endoplasmic reticulum	14.12	16.04
KRG97365	Soybean	cytosol, endoplasmic reticulum, nucleus	14.01	15.93
KRH07342	Soybean	cytosol	13.78	15.69

Protein Annotations

Gene3D:1.20.120.730	EntrezGene:100781518	Gene3D:2.30.30.380	Gene3D:3.40.20.10	Gene3D:3.40.50.410	MapMan:35.2
EMBL:ACUP02012157	InterPro:ADF-H/Gelsolin-like_dom_sf	EnsemblPlantsGene:GLYMA_19G221300	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0006888
GO:GO:0008150	GO:GO:0008270	GO:GO:0015031	GO:GO:0016020	GO:GO:0030127	InterPro:Gelsolin-like_dom_sf
InterPro:IPR029006	InterPro:IPR036465	UniProt:K7MZM9	EnsemblPlants:KRG96600	ProteinID:KRG96600	ProteinID:KRG96600.1
ProteinID:KRG96601.1	PFAM:PF04810	PFAM:PF04811	PFAM:PF04815	PFAM:PF08033	PANTHER:PTHR11141
PANTHER:PTHR11141:SF6	SUPFAM:SSF53300	SUPFAM:SSF81811	SUPFAM:SSF81995	SUPFAM:SSF82754	SUPFAM:SSF82919
InterPro:Sec23	InterPro:Sec23/24_helical_dom	InterPro:Sec23/24_helical_dom_sf	InterPro:Sec23/24_trunk_dom	InterPro:Sec23_24_beta_S	UniParc:UPI000233E48C
InterPro:Znf_Sec23_Sec24	InterPro:Znf_Sec23_Sec24_sf	SEG:seg	InterPro:vWFA_dom_sf	:	:

Description

hypothetical protein

Coordinates

chr19:+:47313475..47318834

Molecular Weight (calculated)

95009.2 Da

IEP (calculated)

6.697

GRAVY (calculated)

-0.171

Length

871 amino acids

Sequence
(BLAST)

001: MANPTQPNVG FTPERESSNP EKSPIPPPPS FVASPPGFPP PKLHLQQDQA SSRSVKTPNV LSPANGVTTG SPVPHLSTPP GPPVFTSPVR PAAVPFRTSP
101: ASPQPLAFSS ASSLPTSSSP LQFSNGSFES QHQVSDSIED HVPLGESSFV LFSAHKVLKR KKQANVPSLG FGALVSPGRE VSMGPQIIQR DPHRCQSCGA
201: YANIYCNILL GSGQWQCVIC RKLNGSEGEY IAHSKEDLHR FPELSSPMFD YVQTGNKRPG FVPVSDSRMS APIVLVIDEC LDEPHLHHLQ SSLHAFVDSL
301: PPITRLGIIL YGRTVSVYDL SEEAMASADV LPGDKSPSQE SLKALIYGTG IYLSPMHASL AVAHSIFSSL RAYKLNVPEV SRDRCLGTAV EVALAIIQGP
401: SADLSRGVVK RSGGNSRIIV CAGGPNTYGP GSVPHSFSHP NYPYMEKTAI KWMENLGCEA HRHNTIIDIL CAGTCPVRVP ILHPLAKTSG GVLVLHDDFG
501: EAFGVNLQRA SARSAGSHGL LELRTSDDIL ITQVVGPGEE SHVDTHETFK NDTALYIQML SVEETQSFSL SMETEGDIKS DFVFFQFAIQ YSNVYQADVS
601: RVITVRLPTV DSISAYLESV QDEVAAVLIA KRTLLRAKNH SDAIDMRATI DERIKDIALK FGSQLPKSKL HSFPKELSLL PELLFHLRRG PLLGSIIGHE
701: DERSVLRNLF LNASFDLSLR MVAPRCLMHR EGGTFEELPA YDLAMQSDAA VVLDHGTDVF IWLGAELAAD EGRSAAALAA CRTLAEELTE YRFPAPRILA
801: FKEGSSQARY FVSRLIPAHK DPPYEQEARF PQLRSLTSEQ RTKLKASFVH FDDPSFCEWM RSLKVVPPQP S

Best Arabidopsis Sequence Match ( AT4G01810.3 )
(BLAST)

001: MANLPKSSVN YPGTLTPLEP NRPSPQPDRT PVPHSPPVVA SPIPPRFPQP SFRPDQMSSP SMKSPSLLSP ANGIRTGSPI PRLSTPPGPP VFNTPVKPAA
101: VPFRTSPATP QPMAYSSANS SLPVSTPSFY SNGSSVGSQR DLPDVVRMEE PIAADSPYVL FSANKVLKQK KLANVASLGF GAIVSAGREI SPGPQIIQRD
201: PHRCLNCGAY SNPYSSILIG SGQWQCVICE NMNGSKGEYV ASSKNELQNF PELSLPLVDY VQTGNKRPGF VPASDSRTSA PVVLVIDECL DEPHLQHLQS
301: SLHAFVDSLP QTTRLGIILY GRTVSIYDFS EDSVASADVI SGAKSPSAES MKALIYGTGV YLSPMHASLK VAHEIFSSLR PYTLNVPEAS RDRCLGTAVE
401: AALAIIQGPS AEMSRGVVRR AGGNSRIIVC AGGPITYGPG SVPHSMSHPN YPYMEKTAIK WMENLGREAH RHNTVVDILC AGTCPLRVPI LQPLAKASGG
501: VLVLHDDFGE AFGVDLQRAA TRAAGSHGLL EVRCSDDILI TQVIGPGEEA HSETHETFKS DAALSIQMLS VEETQSFSLS MENKRDIKSD HVFFQFAFHY
601: SDVYQADVSR VITFKLPTVD SISAYLQSVE DEASAVLISK RTLLLAKNQK DAVDMRATVD ERIKDIALKF GSQVPKSKLY SFPKELSSLP ELLFHLRRGP
701: LLGNIIGHED ERSVLRNLFL NASFDLSLRM VAPRCLMHQE GGTFEELPAY DLSMQSDKAV ILDHGTDVFI WLGAELSADE VKSAAVLAAC RTLAEELTEF
801: RFPAPRILAF KEGSSQARYF VCRLIPAHKD PPYEQEARFP QIRTLTTEQR MKLKSSFIEF DEASFCEWMR SLKVVPPEPR

Arabidopsis Description

Sec23/Sec24 protein transport family protein [Source:UniProtKB/TrEMBL;Acc:Q84WV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.